Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f17
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 FALKGQVVSKLLYPINRELVQYLTWCN 148
           F LK + V  LLY + +  +  +TW N
Sbjct: 33  FLLKQKKVYNLLYRVAQPALANITWYN 59


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 FALKGQVVSKLLYPINRELVQYLTWCN 148
           F LK + V  LLY + +  +  +TW N
Sbjct: 33  FLLKQKKVYNLLYRVAQPALANITWYN 59


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 219 LEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDG 398
           L+ +I C L+I     + +   A     +GQ ++    + T++   F +S  C  ++ DG
Sbjct: 63  LDYRISCLLSIFKQEFDET-ERASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDG 121


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 219 LEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDG 398
           L+ +I C L+I     + +   A     +GQ ++    + T++   F +S  C  ++ DG
Sbjct: 31  LDYRISCLLSIFKQEFDET-ERASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDG 89


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 129 GFLDNQHCTMSNIEP--AHDLLDKVILRQLDLLEQKIKCE 242
           GFL+N  CT +   P   H L    ++  LD     IK E
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLAHNDLMSPLDEPAVHIKQE 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,976
Number of Sequences: 438
Number of extensions: 2428
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)