Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f16
(595 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 23 3.0
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 22 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 6.9
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 21 9.1
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 21 9.1
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 485 WSSKTTTNK*VPSSL*ETLATAVYD 559
WSSKT TN V S+ + + YD
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYD 246
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 247 GGGWIPSGYCSPRGYVHLPA 188
GG P GY +G+VHL A
Sbjct: 77 GGLEEPKGYTLFKGFVHLGA 96
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 525 LEGTYLFVVVLEDHRAVTLPAVVTVLHHR 439
L G+Y ++ +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 592 SDTVSRFYLKSIIHSSRERFLQARGDLFICRRL 494
++ +SR + S + R F+ R L IC L
Sbjct: 743 TNRISRIFNASKHSAKRPSFISPRSQLIICSGL 775
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 430 VFMAVMEDRHYCGKCHSTMVFQDDD 504
VF V ED+ C H T Q DD
Sbjct: 34 VFDLVAEDKARCMSEHGTTQAQIDD 58
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 430 VFMAVMEDRHYCGKCHSTMVFQDDD 504
VF V ED+ C H T Q DD
Sbjct: 34 VFDLVAEDKARCMSEHGTTQAQIDD 58
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,944
Number of Sequences: 438
Number of extensions: 2961
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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