Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f14
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   5.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   9.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   9.1  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 295 FLVIEYLEWDNCYTEI 342
           F +I+Y  W  C+ E+
Sbjct: 231 FTLIDYSLWKACFVEV 246


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = +1

Query: 316 EWDNCYTEIVPKDRLRVKLPKTPIDKNTFHK 408
           ++D C   I P+++  +      +D+N   K
Sbjct: 88  QYDTCQQGIYPENKTLINETSLQLDENKLDK 118


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = +1

Query: 316 EWDNCYTEIVPKDRLRVKLPKTPIDKNTFHK 408
           ++D C   I P+++  +      +D+N   K
Sbjct: 88  QYDTCQQGIYPENKTLINETSLQLDENKLDK 118


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 163 FLPPKDTGKHTE 198
           + PPK TGK+ E
Sbjct: 442 YCPPKHTGKNCE 453


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = +1

Query: 316 EWDNCYTEIVPKDRLRVKLPKTPIDKNTFHK 408
           ++D C   I P+++  +      +D+N   K
Sbjct: 88  QYDTCQQGIYPENKTLINETSLQLDENKLDK 118


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 166 RKLEKTETLILAASHFQ 116
           ++++KT  L LAA+H +
Sbjct: 63  KRMDKTSILRLAATHLR 79


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 163 KLEKTETLILAASHFQRL 110
           KLEK + L +   H Q L
Sbjct: 74  KLEKADILEMTVKHLQNL 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,726
Number of Sequences: 336
Number of extensions: 2208
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)