Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f14
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    28   0.55 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   3.9  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   5.2  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 4   IRFQTXMEDLSVEVYG--ENGAYYKAIVTDVLDNEVLVAFENDWQPESKF 147
           + + +  +DLS+ ++G  +N  +Y+  +  ++        + DW PE +F
Sbjct: 101 LNYDSETKDLSIFIHGLWKNTIFYEIPLLALVSESYFKFVDKDWSPEGQF 150


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 298 LVIEYLEWDNCYTEIVPK 351
           L +EY +W+  + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 91  LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 240
           +D+E+ +  + + QP S FP  Q  L  K +   K +      +  +FA S+
Sbjct: 60  IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 325 NCYTEIVPKDRLRVKL 372
           N YT+IVP D+ RV+L
Sbjct: 462 NRYTDIVPYDKTRVRL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,669
Number of Sequences: 5004
Number of extensions: 36578
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)