Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f14
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 28 3.8
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 3.8
06_03_0210 + 17968594-17968713,17968895-17969212,17969307-179698... 27 5.1
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 5.1
08_02_0197 - 14150787-14151440 27 6.7
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 27 6.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 27 8.8
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477... 27 8.8
01_06_0746 - 31636024-31641396 27 8.8
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 133 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNXK 246
P+S+ P+ LPP + K FTE V+ + + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +1
Query: 304 IEYLEWDNCYT-EIVPKDR 357
++YL++DNCY I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175
>06_03_0210 +
17968594-17968713,17968895-17969212,17969307-17969828,
17970103-17970384
Length = 413
Score = 27.5 bits (58), Expect = 5.1
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Frame = -2
Query: 374 GNFTLRRSLGTISV*QLSHSRYSITRKSPLIILIFAVHHPHASXSLDLANTSTSWFSVNS 195
GN TL GT +V + S +SPL +++ V HP A + W + +
Sbjct: 55 GNATLLIPEGTFAVSTVEFSGPCKNGRSPLAVVVDGVLHPCAGGCHRKSGDDDVWITFSG 114
Query: 194 VC-LPVSLGGKKT*ENGNFDSGCQSFSKATRTSLSSTSVTMA 72
V L V+ G G T T+L SV A
Sbjct: 115 VSNLLVTGAGTLDGRGGEHGHSNGGGKSKTTTTLELDSVANA 156
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 197 SVCLPVSLGGKKT*ENGNF 141
SVC PVSLGG+ + +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263
>08_02_0197 - 14150787-14151440
Length = 217
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 269 AVHHPHASXSLDLANTSTSWFSVNSV 192
A+HH HA L A TSTS F + SV
Sbjct: 30 AMHHHHAHKPLITALTSTSSFLLRSV 55
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 237 RPSKYFHLLVLSKFCVFASVFRW*ENLRK 151
RP + H+L KF + + +W E L K
Sbjct: 495 RPKRILHMLKKKKFVLMVELHKWLERLEK 523
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 130 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNXKEACGWWTANIKMMRGDFLVIE 309
+P+S +P S + + G T ++ +E + R E C W M+ IE
Sbjct: 451 EPDSAYPDSDLHVS-HIFGGSTTYSSKREYKKVER----EVCSTWQGAAPKMKWSEQKIE 505
Query: 310 YLEWDNCYTEIVP 348
+ E D+ T ++P
Sbjct: 506 FSEEDHPKTSVIP 518
>06_01_0658 +
4772855-4772983,4773108-4773218,4773335-4773366,
4773469-4773637,4773728-4773934,4774318-4774362
Length = 230
Score = 26.6 bits (56), Expect = 8.8
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = +1
Query: 40 EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEV 219
E+ E G+ Y V +L + V F W FS+ +LP +D E+ E
Sbjct: 120 ELEEELGSDYPIFVKPMLQSHVTGGF---WLSLPTH-FSRKYLPKRDETIRLVDEEDDEF 175
Query: 220 EVFARSNXKEACGWW---TANIKMMRGDFLVIEYLE 318
+ +N + G W + K++ GD LV + ++
Sbjct: 176 DTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQ 211
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 343 QFPYNSYPILDILSQGNHPS 284
Q YN PI D++ G+HPS
Sbjct: 22 QAAYNIIPIQDVVMHGDHPS 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,610
Number of Sequences: 37544
Number of extensions: 235818
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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