Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f14
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U64853-1|AAB04974.2|  517|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 203 VNSVCLPVSLGGKKT*ENGNFDSGCQSFSKATRTSLS 93
           ++ VCLP++ G      NG F + C+    A+R+ L+
Sbjct: 273 ISDVCLPLNYGVGLELSNGVFINSCEPNGAASRSGLA 309


>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = -2

Query: 371 NFTLRRSLGTISV*QLSHSRYSITRKSPLIILIFAVHHPHASXSLDLANTSTSWFSVNSV 192
           N  L +++G     Q   ++  IT    L+I     H P  S  + L   S SW +V  +
Sbjct: 79  NTYLNQTMGLGMYLQGPITQMIITINRFLVIWFTPTHVPQYSHRITLGALSVSWITVTWL 138

Query: 191 CLPVSLGGKKT*ENGNFD 138
              + L G     N NFD
Sbjct: 139 STLIGLPGFD--NNNNFD 154


>Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical
           protein T05A10.3 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 411 KLVKCVFVYXGLR*FYPKTIFRHNFRITVIP 319
           ++ +C+ +Y   + FY KT+F      TV+P
Sbjct: 150 RIRQCIPIYVQYKAFYEKTVFETKVHETVLP 180


>U64853-1|AAB04974.2|  517|Caenorhabditis elegans Hypothetical
           protein K11G9.3 protein.
          Length = 517

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 175 KDTGKHTEFTENQEVEVFARS 237
           KDTG H E T N+ +E ++R+
Sbjct: 326 KDTGDHFEATRNKIIEFYSRN 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,328
Number of Sequences: 27780
Number of extensions: 209775
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)