Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f11
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    28   0.74 
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   0.74 
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    28   0.98 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   2.3  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   5.2  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   5.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   5.2  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   6.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   6.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.9  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   9.1  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 198 NCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMK 377
           N K  VS+  +K+ K+ Y E   +   S  + V K    + L P  +  TK+G+ Q+I++
Sbjct: 646 NKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIE 705

Query: 378 S 380
           +
Sbjct: 706 N 706


>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 126 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 245
           ++LEQ   Q++   +D  + LK  + K  V +H+D  + Y
Sbjct: 11  HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +3

Query: 189 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQL 368
           KY  CK  +S     +Y   + +S   +P +AP+ + +   P +      L+    + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231

Query: 369 IMKSK 383
           + + K
Sbjct: 232 LAQGK 236


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 339 LITKSGVIQLIMKSKLPYAIELQEWLL 419
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 467 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 375
           CG++L  A  L  YFF    L  +G+RK+AL
Sbjct: 86  CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 420 EEVIPQVLCTGKYDPAIKQQEEKNKQL 500
           + V+ +++  GKY   IK+Q  +NKQL
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQL 577


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 207 DAVSRHVDKKYKYTYSESGARLPPS-APNSVAKQGDPLYLQPHTVLITKSG-VIQLIM 374
           + ++  + K Y+   +  G   P + +PN +A    PL   P   L  KSG V+++++
Sbjct: 58  ELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILL 115


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 450 GKYDPAIKQQEEKNKQLVTKLIATF 524
           G+++  IKQQEE  K L +K  + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 180 SSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVA 299
           +++ Y +C  A  RH         SE+G   P S  N ++
Sbjct: 154 TAVPYDSCLPAPDRHTPSSASSRASETGTTSPQSMRNQIS 193


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 319 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 140
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 248 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 300

Query: 139 CSSTYL 122
            + T +
Sbjct: 301 SNGTVI 306



 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 319 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 140
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 326 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 378

Query: 139 CSSTYL 122
            + T +
Sbjct: 379 SNGTVI 384



 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 319 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 140
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 404 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 456

Query: 139 CSSTYL 122
            + T +
Sbjct: 457 SNGTVI 462



 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 319 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 140
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 482 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 534

Query: 139 CSSTYL 122
            + T +
Sbjct: 535 SNGTVI 540



 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 319 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 140
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 560 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 612

Query: 139 CSSTYL 122
            + T +
Sbjct: 613 SNGTVI 618


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 KYTYSESGARLPPSAPNSVAKQGDPLYLQP 329
           +Y Y    ARLP  AP   AK G    ++P
Sbjct: 83  RYRYLNKYARLPHEAPIKEAKLGPDTNIRP 112


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 240 KYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMKSKLP 389
           K++YS++  +L    PNS   Q   L LQ +  L+   G I + + SK P
Sbjct: 66  KFSYSDALKKLRIDEPNSTVNQHHQLNLQ-YEALMNDLGGINIFL-SKPP 113


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 102 GQDTFTLRYVLEQGNPQVKFVAKDIASSLKYGNC 203
           G DT   RY+ E G   +KF+  D      Y NC
Sbjct: 77  GTDTRVFRYISEYGPENLKFIEFDF-----YPNC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,312
Number of Sequences: 5004
Number of extensions: 41129
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)