Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f11
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524... 29 1.7
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 29 3.0
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 4.0
07_03_0349 - 17051786-17052376 28 5.3
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604... 28 5.3
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 27 7.0
05_04_0068 + 17635693-17637204 27 7.0
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 27 7.0
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 27 9.2
03_05_0896 - 28592658-28593331,28594069-28595455 27 9.2
>06_01_0719 +
5239238-5239635,5239735-5239945,5240379-5240454,
5240573-5240675,5241089-5241157,5241318-5241354,
5241445-5241519,5241598-5241649,5241752-5241796,
5241994-5242080,5242348-5242445
Length = 416
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 168 KDIASSLKYGNCKDAVSRHVDKKY 239
K +A S+ GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -2
Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQRLYNFHILNCWRC 172
P C +P + IC F+P + ++ N + CW C
Sbjct: 408 PNCRQPNPKIVEDNFSHIICTFHPFAVIWQMGNNSHMFCWAC 449
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 170 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 72
L KL+ LE H+P R+ + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362
>07_03_0349 - 17051786-17052376
Length = 196
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQR 208
P CL R +V PPTR Y R+ L R
Sbjct: 42 PACLRRRRLVLPPTRLAYYAAAVGRLRLHR 71
>06_01_0806 -
6048042-6048138,6048461-6048550,6049362-6049425,
6049504-6049552,6050403-6050459,6050953-6051024,
6051912-6052003,6052542-6052614,6052686-6052748,
6052837-6052901,6053803-6053890,6053974-6054015,
6054097-6054188,6054601-6054688,6055134-6055225,
6055368-6055419
Length = 391
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 204 KDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITK 350
+D HVDKK +T + G ++ + A+ P +QP V++ +
Sbjct: 258 RDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLR 306
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 132 LEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 284
++ G Q+K + Y N K V + ++KYKY + G P A
Sbjct: 573 MQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQA 623
>05_04_0068 + 17635693-17637204
Length = 503
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 165 AKDIASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQ 305
++ SS Y + K + SRH Y + S ARL +P +A++
Sbjct: 41 SRSARSSSYYSSSKSSSSRHRYAPYSISSSRRLARLEDKSPRDIARR 87
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 246 YICIFYPRVCLQRLYN--FHILNCWRCPWP 163
++CI +P L L+N F I + W P P
Sbjct: 292 FVCIMHPHATLSSLFNSFFDIFSHWHWPLP 321
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 78 VKIGQFKFGQDTFTLRYVLEQGNPQVKFVAKDIASS 185
V+ G FK +D + L++ N + +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 353 GRDSIDYEEQASVRHRITR-MAFRRSNSSSAMHGQVRPRN 469
GR +++E ++S+ R + + S SSSA HG ++ N
Sbjct: 468 GRTPLNWETRSSIALAAARGVEYIHSTSSSASHGNIKSSN 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,324
Number of Sequences: 37544
Number of extensions: 274404
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -