Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f10
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    68   1e-12
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    31   0.10 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.96 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   1.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   2.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   2.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   5.1  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   9.0  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    25   9.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/99 (31%), Positives = 56/99 (56%)
 Frame = +3

Query: 306 ETILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELY 485
           E++LE +R  HEE ER   A+V   +      RE +  +H+     +++ E S +L   +
Sbjct: 3   ESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLVSH 62

Query: 486 EDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPN 602
           E  D L+ +E++ ++   +  EFY  L +I+EFH+K+P+
Sbjct: 63  ESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPD 101


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
 Frame = +3

Query: 312  ILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS--------- 464
            + +QQR+Y EE  R  +A  + +      + E +   + + ++HD Y+E++         
Sbjct: 785  VAKQQRAYEEEINRIWNAQKRGL---SINNLEELAKKYGINSIHDDYVESNEETTREETP 841

Query: 465  -----IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 581
                 +R+  LY DK+G  + +   +  P     +  + ++I E
Sbjct: 842  SSDKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDE 885


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 411 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 584
           ++  HR     D      IRLK+       L++E+      +   + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475

Query: 585 HRKH 596
           H KH
Sbjct: 476 HEKH 479


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 16  FIDGLRIHFIHTTSMN--KIYLKNVDDL 93
           FID LRIHF  T   N  KI LKN+  L
Sbjct: 31  FIDKLRIHFYTTIRQNLLKIDLKNICSL 58


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +3

Query: 297  LKMETILEQQRSYHEERERTMDAMVKEILH----KKTGHRETINADHRL-KNLHDRYI-- 455
            L +  ILE Q  Y     R    ++K +LH      T ++E  N+   L + LH  Y   
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHSTYTDE 1066

Query: 456  EASIRLKELYEDKDGLRKEEISAL 527
            E ++ L  L+  +  +R   + AL
Sbjct: 1067 ELNLLLSNLFHPESSIRSAVLQAL 1090


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = +3

Query: 327 RSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLR 506
           ++ HEE    +D+ + E++ K+   +E      +++ + D   +    L+EL E+K+ + 
Sbjct: 178 QTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLRELDEEKEKVY 231

Query: 507 KEEISALSGPHEFQ 548
            EE    +  ++FQ
Sbjct: 232 AEEQEFYNNLNQFQ 245


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 551
           I++ +   RE +N   R +    + +EA    +E  E+K        S++SG H  EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243

Query: 552 FYSRLKQ 572
           +   LK+
Sbjct: 244 YVESLKK 250


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 248 YYCILQGD*HKTISITFKNGNNFRATTKLP*GKGKNHGRNGQRNSS 385
           +YCIL           FK+   +R  T  P  K K   R  QRNSS
Sbjct: 29  FYCILN-------ERAFKHYKTYRRITDCPEIKNKKSRRKNQRNSS 67


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 474 KELYEDKDGLRKEEISALSGPHEFQEFYSR 563
           KE  +++D L+KEE   +  P EF+ F  R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 363 AMVKEILHKKTGHRETINADHRLKN 437
           ++ K  LHK T H  T  + H  KN
Sbjct: 22  SLYKRRLHKSTSHSSTATSSHYSKN 46


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
 Frame = +3

Query: 177 SIFCMLPYIFSHNLNFKIINH-------YFNIIVFYKVID 275
           +IFC+  +IF++++   I++H       Y+N+++   ++D
Sbjct: 287 TIFCLNAFIFAYSVGVVIVSHITESPFPYWNVLILPFLVD 326


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 341 GKGKNHGRNGQRNSSQKNW 397
           G+G+  GR G +   +K W
Sbjct: 16  GRGRGRGRRGAKRDEEKEW 34


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 550 SSIRDLSKLKSFIENIQMKY 609
           SSI+DL   + F+EN++ +Y
Sbjct: 81  SSIQDLEGFREFMENLEHRY 100


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 429 LKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 593
           L+NL +   E   +LKEL + +  L KEE   L   +   +  S+ K++K  + K
Sbjct: 22  LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,117
Number of Sequences: 5004
Number of extensions: 43732
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)