Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f10
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 41 0.001
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381 31 0.75
08_02_0077 - 11979497-11979654,11980012-11982178 31 0.99
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 5.3
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 28 5.3
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 7.0
05_05_0299 - 23930657-23932627 28 7.0
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097... 27 9.2
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 309 TILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS-----IRL 473
T+LE R+ HE+ ER V+E+ + R+ + HR++++ D I S +R
Sbjct: 4 TVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLIIVRT 63
Query: 474 KELYEDKDGLRKEEISALSGPHEFQ 548
KE E K L EE+ A E Q
Sbjct: 64 KENAEKKLTLTYEEMEAEREEEEVQ 88
>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
Length = 406
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 408 TINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFH 587
T+ D K LH ++ S +L EL + DGLRKE +L E+++ + +KQ+++
Sbjct: 141 TVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QSLRSAFEYEK-NTNIKQVEQMR 197
Query: 588 RKHPN 602
N
Sbjct: 198 TMEMN 202
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 387 KKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 536
KK H H +N H+RY E S+ +KE +D + E+I P
Sbjct: 286 KKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFGEDIRCAQMP 335
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/106 (19%), Positives = 49/106 (46%)
Frame = +3
Query: 264 KVIDIKQFL*PLKMETILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLH 443
KV +I++ +++ +L++ + +RE+ + ++KE + ++E +N + ++
Sbjct: 442 KVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNLRSEIDGMY 501
Query: 444 DRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 581
DR S+ E+ ++ L K + E S L+ KE
Sbjct: 502 DRLAMESL---EVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKE 544
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 339 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE-LYEDKDGLRKEE 515
E++ + D ++ + H +T HR KNLH + E I+L E L GL + E
Sbjct: 708 EQKRQEADNAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTENLDRSTKGLEELE 767
Query: 516 ISALSGPHEFQEFYSRL 566
+ L + +E S +
Sbjct: 768 NAKLDLENTSRELKSTI 784
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 339 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE 479
E++ + D+ ++ + H +T HR KNLH + E I+L E
Sbjct: 488 EQKRQEADSAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTE 534
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 441 HDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 581
H R++E S+R KE + KEE A + + +E LK +K+
Sbjct: 322 HSRFVEGSVRKKESSRKQQRKNKEERIARAKQEQAEEL-KHLKNLKK 367
>03_02_0789 +
11207769-11208059,11208370-11208557,11208701-11209785,
11210163-11210288,11210367-11210605,11210688-11210806,
11210894-11211014
Length = 722
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 429 LKNLHDRYIEASIR---LKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHP 599
L H+R + + LKE+ +++ L+ +SA +FQ ++S +K R HP
Sbjct: 185 LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPGRLHP 244
Query: 600 NEI 608
EI
Sbjct: 245 VEI 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,074
Number of Sequences: 37544
Number of extensions: 221954
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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