Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f06
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   1.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   8.1  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 224 VGAFSATDIKNDNRNQYCK-YSNSL 153
           +GAF A  +  +   +YC+ Y NS+
Sbjct: 50  LGAFEAAHLNAEGMKKYCETYKNSI 74


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 194 NDNRNQYCKYSNSLN 150
           N+N N Y  Y+N+ N
Sbjct: 331 NNNYNNYNNYNNNYN 345


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 173 CKYSNSLNVAMY 138
           CKY N+  + MY
Sbjct: 223 CKYGNNCEIDMY 234


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 173 CKYSNSLNVAMY 138
           CKY N+  + MY
Sbjct: 20  CKYGNNCEIDMY 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,938
Number of Sequences: 438
Number of extensions: 2102
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)