Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f03
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 107 2e-24
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 105 5e-24
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 105 7e-24
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 100 2e-22
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 84 1e-17
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 80 3e-16
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 69 4e-13
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 64 1e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 53 3e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 48 1e-06
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 46 6e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 46 6e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 45 7e-06
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 45 1e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 45 1e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 44 2e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 43 3e-05
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 42 5e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 38 8e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.13
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 3.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 6.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 6.4
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.5
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 8.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 8.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.5
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 107 bits (256), Expect = 2e-24
Identities = 50/83 (60%), Positives = 62/83 (74%)
Frame = +1
Query: 343 YSYIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDT 522
Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I + +KIK QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 523 AGQERFRAVXRSYYRGAAGALMV 591
AGQER+RA+ +YYRGA GAL+V
Sbjct: 67 AGQERYRAITSAYYRGAVGALIV 89
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 105 bits (252), Expect = 5e-24
Identities = 47/83 (56%), Positives = 59/83 (71%)
Frame = +1
Query: 343 YSYIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDT 522
Y Y+FK ++IGD GVGKSCLL +F D + TIGV+F R E+ G+ +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDT 64
Query: 523 AGQERFRAVXRSYYRGAAGALMV 591
AGQERFR + SYYRGA G ++V
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIV 87
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 105 bits (251), Expect = 7e-24
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +1
Query: 340 NYSYIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWD 519
+Y Y+ K ++IGD GVGKSCLL +F++ F TIG++F R IE+ G++IKLQIWD
Sbjct: 5 SYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWD 64
Query: 520 TAGQERFRAVXRSYYRGAAGALMV 591
TAGQERFR + +YYRGA G L++
Sbjct: 65 TAGQERFRTITTAYYRGAMGILLL 88
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 100 bits (239), Expect = 2e-22
Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Frame = +1
Query: 340 NYSYIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVA----GQKIKL 507
+Y Y+ K ++ G G GKSCLL +F ++ HT+G++F +RII V ++IKL
Sbjct: 5 SYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKL 64
Query: 508 QIWDTAGQERFRAVXRSYYRGAAGALMV 591
QIWDTAGQE+FR+V R+YYRGAAGA++V
Sbjct: 65 QIWDTAGQEKFRSVARNYYRGAAGAVLV 92
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 84.2 bits (199), Expect = 1e-17
Identities = 36/78 (46%), Positives = 57/78 (73%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +I+GD GVGK+CL++QF ++KF + TIG +F T+ + V + + LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 538 FRAVXRSYYRGAAGALMV 591
F+++ ++YRGA ++V
Sbjct: 70 FQSLGMAFYRGADCCVIV 87
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 79.8 bits (188), Expect = 3e-16
Identities = 34/81 (41%), Positives = 58/81 (71%)
Frame = +1
Query: 349 YIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAG 528
++ K II+G+ GVGK+ +++Q+ ++KF D TIG +F T+ + V + + LQ+WDTAG
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 529 QERFRAVXRSYYRGAAGALMV 591
QERF+++ ++YRGA ++V
Sbjct: 67 QERFQSLGVAFYRGADCCVLV 87
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 69.3 bits (162), Expect = 4e-13
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = +1
Query: 340 NYSYI---FKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQ 510
NYS+ FK + +G+ VGK+ L+ +F +F TIG++F ++ + + + ++LQ
Sbjct: 4 NYSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 511 IWDTAGQERFRAVXRSYYRGAAGALMV 591
+WDTAGQERFR++ SY R ++ A++V
Sbjct: 64 LWDTAGQERFRSLIPSYIRDSSVAIIV 90
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEV-AGQKIKLQIWDTAGQE 534
K +++GD VGKS L+ +F +F TIG F T+ + + +KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 535 RFRAVXRSYYRGAAGALMV 591
R++++ YYR A A++V
Sbjct: 76 RYKSLAPMYYRNANCAIVV 94
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +1
Query: 355 FKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQE 534
+K +++GD GVGKS L Q F+ + TI + + E+ G+ L + DTAGQE
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQE 67
Query: 535 RFRAVXRSYYRGAAGALMV 591
+ A+ Y R G L+V
Sbjct: 68 EYSAMREQYMRTGEGFLLV 86
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 355 FKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQE 534
FK +++GD G GK+ + + +F T+GVE +I +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 535 RFRAVXRSYY-RGAAGALM 588
+ + YY +G G +M
Sbjct: 70 KLGGLRDGYYIQGQCGIIM 88
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +++GD VGK+CLL +T KF +D T+ + ++ + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVM-IGDEPYTLGLFDTAGQED 63
Query: 538 F 540
+
Sbjct: 64 Y 64
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +I+GD GK+CLL F+ F T+ + +EV G+ I+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 538 F 540
+
Sbjct: 67 Y 67
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 45.2 bits (102), Expect = 7e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +I+GD GK+CLL F+ F T+ + +EV G+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 538 F 540
+
Sbjct: 67 Y 67
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 367 IIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQERF 540
+IGD +GK+ L+ + F + T+GV F + I + +I IWD GQ F
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREF 72
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQK-IKLQIWDTAGQE 534
K +++GD G GK+CLL F+ F T+ + T I K I+L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 535 RF 540
+
Sbjct: 76 EY 77
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/61 (40%), Positives = 33/61 (54%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +I+GD GK+ LL+ FT F TI + I V G I+L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 538 F 540
+
Sbjct: 74 Y 74
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 43.2 bits (97), Expect = 3e-05
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +1
Query: 313 LFKMTSGPYNYSYIFK---YIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIE 483
LFK S P++ + K +++G GK+ +L++ + + P T+G T
Sbjct: 5 LFKGFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIP-TVGFNVET---- 59
Query: 484 VAGQKIKLQIWDTAGQERFRAVXRSYYRGAAGALMVM 594
V + IK +WD GQ++ R + R Y+ G G + V+
Sbjct: 60 VTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVV 96
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
K +++GD GK+ LL FT F + T+ + + V G+ ++L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALWDTAGQEE 68
Query: 538 FRAVXRSYYRGA 573
+ + Y A
Sbjct: 69 YERLRPMSYAKA 80
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 367 IIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQERFRA 546
++G VGKS L Q+ + F+ TI F ++ I+ GQ+ +I DTAGQ+ +
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDEYSI 69
Query: 547 VXRSYYRGAAGALMV 591
+ + G G ++V
Sbjct: 70 LNSKHSIGIHGYVLV 84
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
+ +++G GK+ +L++ + + P TIG F +E + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 538 FRAVXRSYYRGAAGALMVM 594
R + R Y++ G + V+
Sbjct: 74 IRPLWRHYFQNTQGIIFVV 92
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQER 537
+ +++G GK+ +L ++ P T G F R +EV G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 538 FRAVXRSYYRGAAGALMVM 594
R ++Y+ + V+
Sbjct: 73 LRNFWKNYFESTEAIIWVV 91
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 173 LDSTTLFHLQISTPQLNYTISRS 241
L S +HL + TPQ Y ++RS
Sbjct: 410 LTSLLGYHLSVKTPQATYVVARS 432
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 582 SSSCTSVV--RSXDSTKPFLSSCVP 514
+S CT V + ++TKPFL +C P
Sbjct: 1222 ASRCTFVAYEQKVETTKPFLRNCTP 1246
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 118 LVCFNILISR*IIFYATKIRQHDIVSLAN 204
L CF I + R +F K H+I+ L N
Sbjct: 610 LECFRIFVYRSALFAFNKSNVHEIIQLLN 638
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 301 KY*LLFKMTSGPYNYSYIFKYIIIGDMGVG 390
K+ L FK+T YNY + Y I ++G+G
Sbjct: 134 KWSLTFKLTQNLYNYRIL--YFIKRNLGIG 161
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 250 NIFISNDNLRLQLTFCE 300
N++ NDN+ LQL +CE
Sbjct: 356 NVWSYNDNIFLQLDYCE 372
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 358 KYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIG--VEFGTRIIEVAGQKIKLQIWDTAGQ 531
K +++G G GKS + ++A +G ++ + G + L +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 532 ERF 540
E F
Sbjct: 62 EAF 64
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 334 PYNYSYIFKYIIIGDMGVGKSCLLHQFTDK 423
P N Y + +++IG G GK+ + ++K
Sbjct: 8 PTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,519
Number of Sequences: 5004
Number of extensions: 47447
Number of successful extensions: 122
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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