Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e22
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    29   2.3  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   3.0  
08_02_1368 + 26440962-26441108,26441293-26441379,26441468-264415...    28   4.0  
01_06_0659 + 30955162-30955377,30955446-30955748                       28   4.0  
05_01_0567 - 4967373-4967675,4968023-4968083,4968217-4968284,496...    27   7.0  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    27   9.2  

>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +1

Query: 181 LLYQIMWPLILQFMRANAAYITLPVAALVGVIGYNLENILSDKYT 315
           ++ ++   +++QFM    +YITLP+ ALV  +G  ++  + D+ T
Sbjct: 386 IIARVCLGVVVQFM---CSYITLPLYALVSQMGSQMKRTIFDEQT 427


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = -2

Query: 432 NILSEHILLIFQLLHIGWVFQYFIR*PVYTLVFDGLVIRCVFIGQYVFQVV 280
           +++ ++     Q+   G++ +Y ++   Y +VFDG+V   V I Q + +V+
Sbjct: 88  DVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVI 138


>08_02_1368 +
           26440962-26441108,26441293-26441379,26441468-26441560,
           26441755-26442000,26442097-26442315,26442653-26442808,
           26442893-26443052,26443148-26443299,26443375-26443462,
           26443533-26443588,26444952-26445026,26445184-26445270
          Length = 521

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 271 VIGYNLENILSDKYTPYNKSIEDQRVDRLTDEVL-KDPTNVKKLKYQEN 414
           ++G +   ILS+ +T       DQ+   ++D++L K  T V++LK ++N
Sbjct: 211 IMGMDPSKILSNVHTSLLDGANDQQTKNISDDILNKLNTMVQQLKEEKN 259


>01_06_0659 + 30955162-30955377,30955446-30955748
          Length = 172

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 433 KHSFRAHSPDISASSHWLGLSILHPLACL 347
           KH  R+H PD   +   LG + LH L C+
Sbjct: 51  KHISRSHPPDRQHNHSGLGTTTLHALPCV 79


>05_01_0567 -
           4967373-4967675,4968023-4968083,4968217-4968284,
           4968390-4968425,4968553-4968726,4968983-4969023,
           4969138-4969187,4969300-4969388,4969490-4969564,
           4969684-4969772,4971320-4971434
          Length = 366

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/81 (22%), Positives = 47/81 (58%)
 Frame = +1

Query: 103 FRNI*YV*IYFKFNFATAYSRTKLVQLLYQIMWPLILQFMRANAAYITLPVAALVGVIGY 282
           F+ I ++ I +++   + ++ +K   +  ++   +++QF+    +Y+TLP+ ALV  +G 
Sbjct: 214 FQIIYFLWILYEYGMDSCFNDSKEF-VFARLCLGVVVQFL---CSYVTLPLYALVSQMGS 269

Query: 283 NLENILSDKYTPYNKSIEDQR 345
            ++  + D  T  +K++++ R
Sbjct: 270 TMKQSIFDDQT--SKALKNWR 288


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 384 QCEEAEISGECARKEC 431
           +C E+++ G C RKEC
Sbjct: 43  ECTESDLDGTCLRKEC 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,192,593
Number of Sequences: 37544
Number of extensions: 229050
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)