Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e18
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.56 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   4.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.2  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.2  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    25   9.1  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   9.1  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 428 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 601
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -2

Query: 633 GQHVTKFCISNLYLMPLLHLGHVLSTFTVSSQSVHKHECPQCR 505
           G      C+  ++       GH+     ++  +  K ECP CR
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCR 294


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 604  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 503
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = +2

Query: 422 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 586
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 587 GIRYKLEIQ 613
            IR+ L  Q
Sbjct: 240 RIRFALPDQ 248


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 386 LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN 565
           +++IK D          ++  +  C  C     V P V+Y  C H  +  DC      + 
Sbjct: 769 IQVIKNDIEKKRQLLGTIQDSEKVCDNCEGLLDV-PFVSY-SCLH-LVHRDCA----TET 821

Query: 566 TCPKCKSG 589
            CPKCK+G
Sbjct: 822 VCPKCKAG 829


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 131 KTVLCCAYVVRR 166
           KT LCC+YV+R+
Sbjct: 63  KTKLCCSYVIRK 74


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 309 GTAARCSRCGATTDV*LTLRAFATKRWKSLRPTETCRSTQNAM*RLSTVHACV 467
           G   R S CGA  D+   LR   +   K   PTE      +A+  + T+ + V
Sbjct: 306 GKILRASWCGARYDIQGVLREACSNLLKKRVPTELRLKRAHALLEIGTIFSNV 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,417
Number of Sequences: 5004
Number of extensions: 51406
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)