Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e16
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    88   1e-18
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    63   5e-11
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    43   5e-05
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   4.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.4  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    26   6.4  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    26   6.4  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   8.5  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   8.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.5  

>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
 Frame = +3

Query: 189 IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 368
           IAKP+A              +S  K+ +R G+K V K +R GEKG+V  AGDISP++++ 
Sbjct: 28  IAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVIS 86

Query: 369 HLPAVCEEKDVQYCYTPSRKDIGAAMGTMR--GCIMVL-------VKEHEDYKDLYEEVK 521
           H+P +CE+ +V Y YT S++ +G A  T R   C+M++       + + E+YK+ YEE+ 
Sbjct: 87  HIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEII 146

Query: 522 SEIKLL 539
            E+  L
Sbjct: 147 KEVPAL 152


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 33/95 (34%), Positives = 50/95 (52%)
 Frame = +3

Query: 252 SNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKD 431
           ++H   +R G     K L  G    +  A D  PIEI+ HLP +CE+K+V Y + PS+  
Sbjct: 26  ASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85

Query: 432 IGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKL 536
           +G A G  R  I   +  +E   DL  ++++ IKL
Sbjct: 86  LGRACGVSRPVISASITTNE-ASDLLPQIQA-IKL 118


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 42/87 (48%)
 Frame = +3

Query: 270 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 449
           ++ GL  V   +   +  +V  A D+ PIE++  LPA+C++  V Y    ++  +G  + 
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIH 191

Query: 450 TMRGCIMVLVKEHEDYKDLYEEVKSEI 530
                ++ + +  E+ K+    + S +
Sbjct: 192 QKTAAVLAVTEVREEDKNELASIVSAV 218


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 348 SPIEIMCHLPAVCEEKDVQYCYTPSRKD---IGAAMGTMRGCIMVLVKE 485
           SPI++  HL    E   V Y +   RKD   I  +  T++G +M+ +K+
Sbjct: 7   SPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRLKD 55


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 208 VAIGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPI 83
           V + FA I      +  LCG +  ++S     +   CF LP+
Sbjct: 133 VFLVFAYITNILVMAMLLCGGSATISSVTGMNTVAVCFLLPV 174


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 217 SFFVAIGFAIILQC-STFSSWLCGSALMLTSAWSSCSTGSCFTLPIISN 74
           +    +  A +L+   + SSWL   A+ L S W  C    C+ LP + N
Sbjct: 143 AILAVVDLATVLEILESLSSWLEKDAIDLQSQWIFC---FCYKLPELLN 188


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 217 SFFVAIGFAIILQC-STFSSWLCGSALMLTSAWSSCSTGSCFTLPIISN 74
           +    +  A +L+   + SSWL   A+ L S W  C    C+ LP + N
Sbjct: 143 AILAVVDLATVLEILESLSSWLEKDAIDLQSQWIFC---FCYKLPELLN 188


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 557 YLQWMTEQFYFTFNFLVQIFIILMFFNKYH 468
           ++ W+    Y+ F  +  IF+I +F++ +H
Sbjct: 129 WMVWLIRILYWIFVAVACIFVISLFYSLFH 158


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 417 PSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEE 515
           PS+KD+    GT+R  I+VLV + +D++ L +E
Sbjct: 47  PSQKDLFILNGTVRPGIIVLVND-QDWELLEKE 78


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 290 DFQAVSDIVLMVTRFLNKFI 231
           +FQ + D+V +VTR LNK I
Sbjct: 461 NFQKLHDVVKVVTRNLNKII 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,385
Number of Sequences: 5004
Number of extensions: 61388
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)