Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30e16
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 102 3e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 58 6e-09
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 46 3e-05
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 46 3e-05
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 33 0.16
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 29 4.5
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 28 6.0
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 28 6.0
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 102 bits (244), Expect = 3e-22
Identities = 48/131 (36%), Positives = 75/131 (57%)
Frame = +3
Query: 147 EPQSHDEKVEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGM 326
E + E + IA+P+A +S +R G+K VQK+LR EKG+
Sbjct: 28 EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGI 87
Query: 327 VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDL 506
AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I++ VK D+K+L
Sbjct: 88 CILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKEL 147
Query: 507 YEEVKSEIKLL 539
Y+EV ++ L
Sbjct: 148 YDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 255 NHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDI 434
N+K ++ G K L G ++ A D P+EI+ HLP +CE+K+V Y + S+ +
Sbjct: 31 NYKQ-LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAAL 89
Query: 435 GAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 539
G A G R I + ++E K +++K +++ L
Sbjct: 90 GRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 264 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 443
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 444 MGTMRGCIMVLVKEHEDYK 500
+ + LV + + K
Sbjct: 195 VRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 264 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 443
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 444 MGTMRGCIMVLVKEHEDYK 500
+ + LV + + K
Sbjct: 175 VRRKTTAAVALVDVNPEDK 193
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = -1
Query: 344 VSSKENHALFTQT*LLLNDFQA---VSDIVLMVTRFLNKFIYLFGEFFCGHRFRY---YT 183
+ S+ +A++ Q + N+ A +S+++ M + LN + + E R YT
Sbjct: 38 ILSRVTNAIYLQAGAIKNEINARELISELLHMPSNQLNTVVNVNVEVASSELRRMHQEYT 97
Query: 182 TMFDFFIVALRFSFNADISLVFLFDRFLLYFTHNFKFL 69
+ FF + SFN D++ +F F+LYF+ L
Sbjct: 98 KLIHFFENRTQSSFNDDVNAIFNNIIFILYFSRKSSLL 135
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 202 IGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPII 80
I F +L STF+SWL S+ S+ SS S+ C T I
Sbjct: 265 IHFQSLLNTSTFTSWLQSSSFSSASS-SSTSSEQCCTFIFI 304
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 236 FIYLFGEFFCGHRFRYYTTMFDFFIV 159
F ++FGEFF H+ R + + F +V
Sbjct: 37 FFWIFGEFFLEHKARVFWRLVQFVLV 62
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 289 SFRSSYVWVKRAWFSLLETFHP 354
+FR VW +WFS +TF P
Sbjct: 244 TFRRCEVWFNSSWFSTAQTFDP 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,824
Number of Sequences: 27780
Number of extensions: 341852
Number of successful extensions: 1081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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