Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e14
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   2.4  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           20   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   3.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   5.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease
          precursor protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 61 LLIIKYGRITVSLLXINK 8
          +L+I YG I  S+  +NK
Sbjct: 22 VLLIFYGSIMFSMTQVNK 39


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 95  TYSEHFHIKTVSA 57
           TY+EH   KTV+A
Sbjct: 72  TYTEHTKRKTVTA 84


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   VNIYLLXATKLLFYHI**LADTVLM 75
           +  Y++   K LFY +  +  TVL+
Sbjct: 223 ITFYIIIRRKTLFYTVNLILPTVLI 247


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 173 LLIFMLYSYLIIYTVIG 123
           L++  L++ LII T++G
Sbjct: 38  LVLAGLFTMLIIVTIVG 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,263
Number of Sequences: 438
Number of extensions: 352
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)