Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30e11
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.069
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 28 1.1
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 27 1.5
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 2.0
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 27 2.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.0
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 7.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 7.9
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 7.9
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 279 IHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAKP 458
IH + + +G V+ I + + A+V +ES+ SA A++ALH ++ +++ AKP
Sbjct: 16 IHALFSAYGNVKDIWMLSPDN-SAIVSYESLSSAIVARDALHNRPVFENHGPVQVMLAKP 74
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.069
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 153 ERSNGNNY-MAGEPCRKRKLPARPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVF 329
E +N N++ G+ + P H L + N ++ + T + +G V I +
Sbjct: 562 ESNNTNSWPTVGDATIENLTQHEPTHALW--VGNLPSGVSATTVATTFSAYGTVSSIRML 619
Query: 330 KKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 455
A + F+SVE+A E L+G I+ G + I FAK
Sbjct: 620 SHKH-SAFLNFDSVETAKHVLEELNGKRIFFGSDPVCISFAK 660
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +3
Query: 261 PITVDVIHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHG 407
P++ + +++I +G+++ + + + A + F S+ SAT A +HG
Sbjct: 173 PLSQERLYSIFRTYGKLRSVTI--NSPTSATLSFSSLRSATSALNCMHG 219
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 441 IEFAKPEKLNVFKNDQ-ESWDYTL 509
+EFA PE+ + KND ES+D+ +
Sbjct: 619 LEFANPEETKILKNDSVESYDWLI 642
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = -3
Query: 385 LVADSTLSNSTIACTPFFLKTTILCTCPCGVLIVCITSTVMGYAGLMMV*SSMWFGRAGS 206
+V D T + I C F L TT+ P +V ++ + ++ + + + W G
Sbjct: 159 IVVDGTPEKNVITCMKFGLSTTLYYFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDP 218
Query: 205 FR 200
F+
Sbjct: 219 FK 220
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 2.6
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 357 EFESVESATRAKEALHGCDIY 419
+F + E++ R K+++ GCD+Y
Sbjct: 34 KFSNGETSVRIKQSVRGCDVY 54
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.0
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Frame = +3
Query: 210 PARPNHILLYTIINPA--------YPITVDVIHTISTPHGQVQRIVVFKKNGVQAMVEFE 365
P R LL + NPA + DV +G+V I V Q V+FE
Sbjct: 503 PIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFE 562
Query: 366 SVESATRAKEALH 404
+ + A +A LH
Sbjct: 563 NADFAEKAITGLH 575
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 360 FESVESATRAKEALHGCDIYSGCCTLKIE-FAKPEKLNV 473
F S ++A A++ L D+YS C + ++ + K + N+
Sbjct: 157 FSSRDAAASARDTLLSSDVYSACSMIILDNYRKGSQTNL 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 237 YTIINPAYPITVDVIHTISTPHGQVQRIVVFKK 335
YT ++PA + V V+H + T +V+ +FK+
Sbjct: 1776 YTCVSPADYLEVMVLHRMRTVEDRVRTCELFKE 1808
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 348 AMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 455
A VE+E A A +HG + G L++E+AK
Sbjct: 50 AFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 1 SLDAATQGGGFVVYNSTKTGFGVISVLF 84
S + T GG V+YN+ TG +I +F
Sbjct: 179 STNVQTYAGGSVLYNAGYTGVELIMTIF 206
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 96 SCTTKQNTNHTETRFGRIVNDKPSSLG 16
S + T HTE + + V+D +SLG
Sbjct: 301 SIASSNRTQHTEDNYNKDVSDAQNSLG 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,659
Number of Sequences: 5004
Number of extensions: 56635
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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