Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e11
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.70 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 161 QRQQLHGRRAMPQTKATGAAEPHTALHHHQS 253
           +R     +R         +  PH  LHHHQS
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQLHHHQS 819



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 188 AMPQTKATGAAEPHTALHHHQSGISHH 268
           A   T ATG  +  T   HH     HH
Sbjct: 123 ATATTTATGLIKQETLQRHHHLQNHHH 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 276 VIHTISTPHGQVQRIVVFKKN 338
           +IH I TPHG ++R V+ K++
Sbjct: 173 LIHWIWTPHGWMRRNVLNKQH 193


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 2   VWTRPPKEEGLSFTILPK 55
           V +RP K+EGL F +L K
Sbjct: 118 VESRPSKKEGLQFDVLVK 135


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +3

Query: 162 NGNNYMAGEPCRKRKLPARPNHILLYTIINPAYPITVDVIHT 287
           +G++++   P       A P+H     + + +YP  + + HT
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 AEPHTALHHHQSGISHHCGRNT 283
           ++PH   +  +S  +HHC ++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 DVIHTISTPHGQVQRIVVFKKNGVQAM 353
           + IHT S  + + +RI + +KNG+  +
Sbjct: 319 EAIHTGSVINTRGERIQLTEKNGIDVL 345


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +3

Query: 351  MVEFESVESATRAKEALHGCDIYSGCCTLKIEFAKPEKLNVFKNDQESWDYTLSE 515
            M   ES +      E L  C    G C+  ++ + P    V+K +    DY + E
Sbjct: 902  MAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQN----DYIVDE 952


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = -1

Query: 177 CSCCRCSFQHPGRYLHVVFFHHYRCKPSCTTKQNT 73
           C  C  +F+H G+    +  H       CT    T
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKT 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,994
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)