Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e07
         (250 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)                   28   1.3  
SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)                    27   2.3  
SB_21478| Best HMM Match : Branch (HMM E-Value=0)                      27   2.3  
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              27   2.3  
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_46201| Best HMM Match : WD40 (HMM E-Value=0)                        26   4.1  
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)               26   5.4  
SB_55994| Best HMM Match : RnaseA (HMM E-Value=4.6)                    26   5.4  
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)         26   5.4  
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.4  

>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
          Length = 505

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 220 TNKFYIESICLRVCCKVFESCVSAPRD 140
           T+++  ES  +  CC ++E+CVS   D
Sbjct: 199 THRYNCESCQVNNCCSIYENCVSCCLD 225


>SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)
          Length = 389

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 113 GSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMGR 6
           GS+ND+ P+ S  N+A  +S  +  MV     Y  R
Sbjct: 18  GSINDYHPVYSSPNSAYLDSNAVHRMVLSSSPYQHR 53


>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
          Length = 666

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   KATHILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNYG 128
           K+ H L+NIE  E   PA    RV   R+GQK++ +S   +G
Sbjct: 488 KSLHGLNNIESIEM--PAYNVHRVEFVRHGQKLLRKSPPPHG 527


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 143 GWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQ 18
           GW K A +F+ S+   L IAS   A  + ++++     YI Q
Sbjct: 136 GWKKMATIFDNSVLS-LQIASSIGATLSTNKLVMINSTYITQ 176


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 102  IERSIKNYGTFWPSRGAETQDSKTLQQTRRQ 194
            ++     Y  +WPS+G+ET D   ++   R+
Sbjct: 1558 LQEDTLTYPQYWPSKGSETYDHLNVRLMSRE 1588


>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 292

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 9   THILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAET 158
           T ++ ++EHHE    A     +C +  G+ I+  S    G  W +R  +T
Sbjct: 22  TFLIKSLEHHEGGINA-----MCISSDGKTIVTGSEDKTGRLWDTRTEDT 66


>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
          Length = 519

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 49  ILLFVVAAFVTLAMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYNKHEDKLIQC 207
           +L+  V  ++ +     S +D +      GH +GL  + R   N H D    C
Sbjct: 149 VLVSQVMFYMAVKKNTSSPKDCIDVLVSQGHKDGLYRRTRVTDNVHRDMKTDC 201


>SB_55994| Best HMM Match : RnaseA (HMM E-Value=4.6)
          Length = 178

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 66  GRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKTLQ 179
           G+  HT  G+ I +   KNY TFW ++    Q+S  L+
Sbjct: 69  GQQIHT-LGKYIKKVLYKNYATFWRTQAQLNQNSGKLR 105


>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
          Length = 375

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 48  YPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAETQD 164
           Y A+C G+   TRY   + + +     ++WP  G   ++
Sbjct: 321 YCALCHGKTNITRYNHVLRKSNTTTEVSWWPLNGEPAEE 359


>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 LRDPLKTTAHFGHPEGLKHKIRRPY 177
           +RD      H+GH EG  + + +PY
Sbjct: 68  IRDLFVAGVHYGHHEGCWNPLMKPY 92


>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  ADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSR--GAETQDSKTLQQTRRQ 194
           AD P VC  + CH    Q +  + ++  G+    R  G+   D +  +Q   +
Sbjct: 194 ADSPVVCPTKACHFFSNQVVASQMVEPQGSTSAQRPYGSAEPDKQAAEQAAHE 246


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 148 GLKHKIRRPYNKHEDKLIQCK 210
           G+ H++ RPYN  E +L+  K
Sbjct: 563 GVPHEVERPYNPLEKQLVYDK 583


>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 231 YNLLQINFTLNQFVFVFVVRSSN 163
           Y L  +NFT + F++VF +   N
Sbjct: 294 YFLFYVNFTASPFIYVFFLEDFN 316


>SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  TLA-MGRKSLRDPLKTTAHFGHPEGLKH 159
           TLA  GR+ L+D     A F +PEGL++
Sbjct: 162 TLAGTGREGLKDGQGDQAAFNYPEGLEY 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,983
Number of Sequences: 59808
Number of extensions: 156532
Number of successful extensions: 420
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)