Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30e06
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 199 2e-52
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 1.7
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 3.0
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 4.0
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 5.2
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 9.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.1
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 199 bits (485), Expect = 2e-52
Identities = 85/145 (58%), Positives = 115/145 (79%)
Frame = +1
Query: 88 MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 267
M+ L+ + T+ FEKL +YIG N+ LIDRPD +CFR +KDRVYY+SE+ + +A +V
Sbjct: 1 MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60
Query: 268 DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 447
NL+S G CFGKFTKTNKFRLHITAL YI+ YA +K+WVK + E FLYG+H++K+ +GR
Sbjct: 61 QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120
Query: 448 ITENTPKHQGVVVLTMSDIPIGFGV 522
IT++TP+HQGVV+ +M+D P+GFGV
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGV 145
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 206 FSLKQYVPSGLSISN-LTFTPMYLVSFSNNILVRSSDNTFI 87
FS K + SISN TP SFSN +L +S + ++
Sbjct: 290 FSFKNLLQDASSISNNFEITPESWCSFSNQLLFSTSKSDYV 330
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 178 PDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYIS 357
PD T F K V Y+SE L+ +V + + + + N FRL T L ++
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSV--SKIYGSLDQEARLNEINNFRLGKTNLLVVT 403
Query: 358 PYA 366
A
Sbjct: 404 DVA 406
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 4.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 42 NSRVFIFREYNKIIEYESIIRRSYKNIIREANQIHWSKR*VTNRQT*WHILLQREERQSV 221
+ RVF R+ +K+ ES+ R + I + + I W V + H+++ +ER SV
Sbjct: 549 DGRVFFLRQDDKLSTLESLPSREAQEEITDLSDILWINSPVDKLE---HLIVGCKERISV 605
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 274 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLY 414
L++ G + K K L I A +Y Y KVW P+ +LY
Sbjct: 338 LLACGATYTKDLKPTNTLL-IAASSYGQKYGAAKVWNIPTVHHSWLY 383
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 418 HHIIKSGLGRITENTPKH 471
HH+ K G+GR+ E +H
Sbjct: 216 HHVDKYGIGRVVEMAMEH 233
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 437 PLLMMWCPYKNCCSADGFTHTLNGA 363
P L + ++N CSAD +LNG+
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGS 89
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 185 PSGLSISNLTFTPMYLVSFSNNILVRSSDNTFIFNYFIIFSKN 57
PS +S L F YL+ S ++ + + N F +FSK+
Sbjct: 746 PSAFDVSQLKFLSSYLLQKSESMDYDLTAIRLLSNGFSVFSKH 788
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 233 SDM*YTLSFFSLKQYVPSGLSI 168
SDM TL FF VPS LS+
Sbjct: 761 SDMAITLQFFKQLSMVPSSLSL 782
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 42 NSRVFIFREYNKIIEYESIIRRSYKNIIREANQIH 146
+ R++ ++Y + + ++RSY +++ EAN H
Sbjct: 410 SERLYYKQKYEQTCQEVERLQRSYNHVMEEANLQH 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,720
Number of Sequences: 5004
Number of extensions: 45893
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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