Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e06
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637    136   8e-33
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    33   0.19 
12_01_0251 - 1858815-1860209                                           28   5.3  
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855...    27   9.2  

>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
          Length = 216

 Score =  136 bits (330), Expect = 8e-33
 Identities = 68/153 (44%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
 Frame = +1

Query: 88  MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPD--------GTYCFREKKDRVYYISEKLL 243
           M+ L E  T+++FEKL K+ G N+K L++RP         G YC R  K+RVYY SE L+
Sbjct: 1   MRALDEKETKMVFEKLFKFTGPNLKHLLERPAVEGPDPQAGRYCLRLHKNRVYYASEALV 60

Query: 244 HLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHH 423
             A  V    L   GT  GKFT    F L + AL  ++ +A  +VW+KP  E+ FL+G+ 
Sbjct: 61  RRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALDLLAAHARRRVWLKPDTERSFLFGNS 120

Query: 424 IIKSGLGRITENTPKHQGVVVLTMSDIPIGFGV 522
           + KS L RITENT  + GVVV++M+D+P+GFG+
Sbjct: 121 VPKSSLARITENTKANDGVVVMSMADVPLGFGI 153


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 HQKWLRQDNREYTETSRCGGINDVRYPDW 512
           HQ WLR    +  E+SR   +  + YPDW
Sbjct: 198 HQLWLRDVMVQCNESSRVHSVRHIEYPDW 226


>12_01_0251 - 1858815-1860209
          Length = 464

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 25/107 (23%), Positives = 39/107 (36%)
 Frame = +1

Query: 160 KLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHIT 339
           +LL    D  Y  R           +L  +A +  P +    G+   K    + +R   T
Sbjct: 200 RLLAADDDAMYSSRSAHLNQMASIAQLQQMAVSSCPPSTGGGGSVQYKDDDDDPYRSPAT 259

Query: 340 ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGV 480
            LT++SP A       P+A   FL     +   +  + E    H GV
Sbjct: 260 PLTFVSPPASTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGV 306


>11_02_0123 -
           8550193-8550213,8550434-8550682,8550787-8550834,
           8550939-8551025,8551104-8551184,8551264-8551368,
           8551464-8551556,8551635-8551715,8551794-8551895,
           8552144-8552224,8552304-8552405,8552499-8552834,
           8552920-8553006,8553275-8553493,8553575-8553769
          Length = 628

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 111 YKNIIREANQIHWSKR*VTNRQT*WHILLQREERQSVLHIREATASSTDSEAGQLSICGD 290
           Y+N+  + + I  S +     Q+    +L  ++ + V   +EA    T S++GQ  +   
Sbjct: 488 YQNLTTKQSIIQSSVKRPRTSQSCAESILPHDKTKQVPQRKEAVLKHTSSKSGQREVYLF 547

Query: 291 MLRKVHKDK 317
            L  ++KDK
Sbjct: 548 SLNAINKDK 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,770
Number of Sequences: 37544
Number of extensions: 271107
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)