Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30e06
(524 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.) 199 1e-51
SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19) 29 2.3
SB_14072| Best HMM Match : ELO (HMM E-Value=5.7) 29 3.1
SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12) 27 7.2
SB_48593| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 27 7.2
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12) 27 7.2
SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32) 27 9.5
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 27 9.5
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 199 bits (485), Expect = 1e-51
Identities = 87/134 (64%), Positives = 108/134 (80%)
Frame = +1
Query: 118 ILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCF 297
++ E + IG N+KLLIDRPDG YCFR KDRVYY+SE ++ A V DNL+S GTC
Sbjct: 31 VVLEVPFQCIGENIKLLIDRPDGNYCFRLHKDRVYYVSELIMRRATNVARDNLISLGTCL 90
Query: 298 GKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQG 477
GKFTK+ KF+LHITAL +++PYA +KVWVKP AEQ FLYG+H+ KSGLGRITENTP++QG
Sbjct: 91 GKFTKSEKFKLHITALDFLAPYAKYKVWVKPGAEQTFLYGNHVTKSGLGRITENTPQYQG 150
Query: 478 VVVLTMSDIPIGFG 519
VV+ +MSD P+GFG
Sbjct: 151 VVIYSMSDSPLGFG 164
>SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 265 PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 444
PDN+ + C K + N HI+ L + PF++W + Q+ + H IK G+
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280
Query: 445 R 447
R
Sbjct: 281 R 281
>SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 265 PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 444
PDN+ + C K + N HI+ L + PF++W + Q+ + H IK G+
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280
Query: 445 R 447
R
Sbjct: 281 R 281
>SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)
Length = 249
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 199 REKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPY 363
RE+K+ +S + + + N +S G C FT+ + + H+ AL PY
Sbjct: 114 RERKEVTPIMSGNTVKVTSFKRAVNSMSCGKCDEVFTQCSSLQTHVCALFPSKPY 168
>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
Length = 226
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 21 LMFLVTLNSRVFIFREYNKIIEYESIIRRSYKNIIREANQIHWSKR*VTNRQT*WHILLQ 200
L +++L S V I + Y + ES+ R I++A ++W+ + + T + IL
Sbjct: 115 LCSVLSLYSFVIIAKHYVQN-GVESLFRMEVNQSIKQALLVYWATKNIELLDTVFMILRH 173
Query: 201 REERQSVLHI 230
R+ + S LH+
Sbjct: 174 RQRQISFLHL 183
>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
Length = 316
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -2
Query: 286 PQILSCPASLSVLDAVASLICNTLCLSSL 200
P +L ASL+V ++ +++CN+L L+S+
Sbjct: 30 PAMLYLSASLNVPTSIMAVVCNSLVLASI 58
>SB_48593| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 341
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 330 AHYSFDLHITLCAVQSVGEAVCGTAVLVWAPHHQKWLRQD 449
A YSF ++ LC V +C VL HQ W R++
Sbjct: 164 ADYSFKVYSALCFVVLGVIPICTMCVLYSRVIHQLWFRRE 203
>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
Length = 345
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 167 SNLTFTPMYLVSFSNNILVRSSDNT 93
SNLT TP+YL N+ R SD+T
Sbjct: 321 SNLTQTPLYLTEGQPNLTRRWSDHT 345
>SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)
Length = 779
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +1
Query: 100 SEDRTRILFEKLTKYIGVNVKL-----LIDRPDGTYC-FREKKDRVYYISEKLLHLAQTV 261
S D R L E L++ V+L + P+ TY R KD ++ + EK+ + ++
Sbjct: 606 SADHLRSLTEVLSRLDKAGVRLKRSKCIFQAPEVTYLGHRIDKDGIHPLDEKIKAIQESP 665
Query: 262 KPDNL 276
+P NL
Sbjct: 666 RPSNL 670
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Frame = +1
Query: 100 SEDRTRILFEKLTKYIGVNVKL-----LIDRPDGTYC-FREKKDRVYYISEKLLHLAQTV 261
S D + L E L++ V+L + P+ TY R KD ++ + EK+ + ++
Sbjct: 762 SADHLKSLTEVLSRLDKAGVRLKRSKCIFQAPEVTYLGHRIDKDGIHPLDEKIKAIQESP 821
Query: 262 KPDNLVSAGTCFGKFTKTNKFRLHITALTYISPY 363
+P NL G + +IT T +SP+
Sbjct: 822 RPSNLKELQAFLGMLNYYACYIPNIT--TILSPF 853
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 390 RLHPHFERRIR*YVSQSCNVQPKFICLCELSEACPRR 280
R + E R+R +++ N P + + EL CPRR
Sbjct: 329 RYYGETEARLREIFTEAQNKSPSIVFIDELDALCPRR 365
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,754
Number of Sequences: 59808
Number of extensions: 335746
Number of successful extensions: 856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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