Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e06
         (524 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione S-tran...    27   0.39 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   4.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.3  

>AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione
           S-transferase u3 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 0.39
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 115 RILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKL 240
           R+ F+  T ++ + NV + + R   T   +EKKD VY   EKL
Sbjct: 99  RLYFDSGTLFVALRNVLMTVLRSGETRIPQEKKDAVYKALEKL 141


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 280 SAGTCFGKFTKTNKFRLH 333
           S   CF +FT++N  + H
Sbjct: 269 SCDVCFARFTQSNSLKAH 286


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 145 IGVNVKLLIDRPDGTY 192
           +GV+ K ++DR DG++
Sbjct: 148 VGVHFKQIVDREDGSF 163


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,758
Number of Sequences: 2352
Number of extensions: 10883
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48205926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)