Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e06
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 253 VLDAVASLICNTLCLSSL 200
           ++ A  +LIC+ LC+S L
Sbjct: 284 MIAASVNLICHILCMSDL 301


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 205 KKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFT 309
           +KD   Y+S + L  A       L+S G   GK T
Sbjct: 105 QKDNKSYLSLRSLLSADVAVATPLISMGALLGKTT 139


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 277 LSCPASLSVLDAVASLICNTLCLSSL 200
           LS   SLS+    +SLI   LC+ +L
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 277 LSCPASLSVLDAVASLICNTLCLSSL 200
           LS   SLS+    +SLI   LC+ +L
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 277 LSCPASLSVLDAVASLICNTLCLSSL 200
           LS   SLS+    +SLI   LC+ +L
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 277 LSCPASLSVLDAVASLICNTLCLSSL 200
           LS   SLS+    +SLI   LC+ +L
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTL 41


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 376 VWVKPSAEQQFLYGHHIIKSGLGRIT 453
           V+ + + E++  Y  H++K   GR++
Sbjct: 41  VFCRNNGEEEAYYRKHLLKDADGRVS 66


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 411 VWAPHHQKW 437
           +W  HH KW
Sbjct: 61  IWTDHHLKW 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 397 EQQFLYGHHIIKSGLGRITENTPK 468
           +Q  ++   ++   LG++TE  PK
Sbjct: 657 QQMTVFQRTLMVGSLGKLTETNPK 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,066
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)