Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   0.94 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   5.0  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    20   8.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 192 RLQCQQCRI-KIISVHQQLRLNLQSIQC 272
           R +CQ+CR+ K +SV  +    +  +QC
Sbjct: 237 RRKCQECRLKKCLSVGMRPECVVPEVQC 264


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 197 PMSTMPNKDNIRTPTTEVKPSIN 265
           P  T      ++TPTT + P+IN
Sbjct: 300 PGPTYSTWSTVQTPTTVMSPTIN 322


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 215 NKDNIRTPTTEVKPSINPVLQVVTAKSTMVPI 310
           +K+N  T   E+K +  P   ++T   + +PI
Sbjct: 152 DKENFITLLREIKEAFQPKGHLLTIAVSAIPI 183


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 187 KGNNLFKALNESKSISCDK*HI 122
           +G N  +  N+   I CD+ H+
Sbjct: 20  RGQNTQRVQNQPLVIGCDEKHV 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,313
Number of Sequences: 336
Number of extensions: 1713
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)