Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.8  
SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces ...    25   5.0  

>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 190 FKGNNLFKALNESKSISCD 134
           ++  NL  +LNE KS+SCD
Sbjct: 69  YRLQNLAASLNEKKSLSCD 87


>SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 257 SINPVLQVVTAKSTMVPIKVVPKV 328
           S  P+LQ    K   +P++V PKV
Sbjct: 2   STQPLLQTTPGKRIALPVRVEPKV 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,115
Number of Sequences: 5004
Number of extensions: 28261
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)