Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    27   6.5  
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891...    27   8.6  
01_01_1106 + 8750597-8754031                                           27   8.6  

>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +3

Query: 39  KFAEDKTAFLKLMHNVFSKIFNIL*EVK--ICYL----SHDIDLLSFKALNKLLPLKRLQ 200
           KF EDK    K +H V S++  I  E +  I  L    S ++D  S +  +K+   KR+Q
Sbjct: 535 KFLEDKDGENKALHKVISRLQTICNEQERTISGLRQGYSTELDKKSVECSDKI--KKRMQ 592

Query: 201 CQQCRIKIISVHQQLRLNLQS 263
            +   I++  V Q+LR  +QS
Sbjct: 593 ME--LIRLTGVEQKLRGEVQS 611


>02_04_0115 -
           19888252-19888406,19888507-19888573,19888867-19889101,
           19889179-19889255,19889350-19889415,19889517-19889565,
           19889651-19889701,19889799-19889851,19889973-19890024,
           19890126-19890214,19890308-19890393,19890603-19890659,
           19890742-19890919,19891852-19891908,19892209-19892439
          Length = 500

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 182 AFKTPPMSTMPNKDNIRTPTTEVKPSINPVLQVVTAK 292
           A KT    T  NK   +TPT+ V   +NP   V T +
Sbjct: 133 AVKTSKSKTKNNKAGPQTPTSNVGSPLNPPTPVGTCR 169


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 104  HSLRSENMLFIARY*LAFIQSFK*IIAFKTPPMSTMPNKDNIRTPTTEVKPSINPVLQVV 283
            HS+ SE  + + R      QS K +     P + T P         T+ + S+ PVL+ V
Sbjct: 908  HSMSSE--ILVKRQKCVLYQSLKELHFEDMPNLETWPTSAATDDRATQPEGSMFPVLKTV 965

Query: 284  TA 289
            TA
Sbjct: 966  TA 967


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,789,313
Number of Sequences: 37544
Number of extensions: 142782
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)