Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   1.2  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   5.0  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  27   6.6  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      27   8.7  

>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 191 TPPMSTMPNKDNIRTPTTEVKPSINPVLQVVTAKSTMV 304
           TPP +T P K    TP     P+  P+L + + ++  V
Sbjct: 166 TPPATTTPTKSTTTTPPATTTPTTRPLLLLCSRRTYSV 203



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = +2

Query: 191 TPPMSTMPNKDNIRTP---TTEVKPSIN--PVLQVVTAKSTMVP 307
           TPP +T P K    TP   TT  KP+    P     T  +T  P
Sbjct: 138 TPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTP 181


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 191 TPPMSTMPNKDNIRTPTTEVKPSINPVLQVVTA 289
           T   S+ PN+    TPTT  +P +NP  QV TA
Sbjct: 771 TTAPSSNPNEST--TPTTGGRPGLNPQGQVTTA 801


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +2

Query: 197  PMSTMPNKDNIRTPTTEVKPSINPVLQVVTAKSTMVPIKVVPKVS 331
            P ST P+       TTE  PSI+P    V A     P  V PK S
Sbjct: 1604 PHSTEPDIKPSNIQTTESTPSISPRGVEVAAGPRRTPPPVAPKPS 1648


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 218  KDNIRTPTTEVKPSINPVLQVVTAKSTMVPIKVVPKVSISCYFSLSEAIQG 370
            K+N+RT +  V P    +   V  K T    +   +V +  Y S+S   QG
Sbjct: 926  KENLRTSSLSVTPPERSLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQG 976


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 212 PNKDNIRTPTTEVKPSINPVLQVVTAKSTMVPIKVVPK 325
           P K +  TP TEVKP  +  +Q    K  M P  + P+
Sbjct: 290 PAKADDVTPATEVKPQ-DESMQAAVEKEPMAPNPLTPR 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,878,620
Number of Sequences: 59808
Number of extensions: 181591
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)