Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     24   2.0  
DQ370042-1|ABD18603.1|  194|Anopheles gambiae putative TIL domai...    23   3.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.1  

>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 IAFKTPPMSTMPNKDNIRTPTTEVKPSIN 265
           I+F+TPP  T+   D +R      +PS N
Sbjct: 288 ISFRTPPYRTIDISDPVRVFVQLERPSDN 316


>DQ370042-1|ABD18603.1|  194|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 194

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 328 DLRYNFDWYHCTFSCY 281
           D RY  D Y+CT  C+
Sbjct: 158 DSRYERDTYNCTEGCF 173


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  LAVINSQKIKLPF*N*CIMFFLRYSTFFK 114
           L  I+ +K+K+P+    ++F + Y+T  +
Sbjct: 344 LTTIDQEKVKVPYDRHFLLFCMVYTTLLQ 372


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,805
Number of Sequences: 2352
Number of extensions: 6688
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35717724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)