Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e04
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    28   3.3  
AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf (pumilio...    28   3.3  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical pr...    27   7.7  
L15313-1|AAA28202.1|  305|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 39  KFAEDKTAFLKLMHNVFSKIFNIL*EVKICYLSHDIDLLSFKALNKL--LPLKRLQCQ-- 206
           K  ED+  FL L  N+F   F  +  V  C  + + ++L+      L  L L +  C+  
Sbjct: 178 KLVEDRAIFLSLCSNMFGNFF--VQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVI 235

Query: 207 QCRIKIISVHQQLRLNLQ 260
           Q  I+ + VH   RL+L+
Sbjct: 236 QLAIQKLDVHLATRLSLE 253


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 138 AINNIFSLLKEC*IS*KKHYALILKRQFYLLRIYHCEFDM 19
           AI  I+ ++  C +  +KH A+  K  FY + I HC  D+
Sbjct: 32  AITPIYIIILVCILKIRKHAAMF-KTTFYTILIQHCLADI 70


>AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 11 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +3

Query: 39  KFAEDKTAFLKLMHNVFSKIFNIL*EVKICYLSHDIDLLSFKALNKL--LPLKRLQCQ-- 206
           K  ED+  FL L  N+F   F  +  V  C  + + ++L+    + L  L L +  C+  
Sbjct: 181 KLVEDRAIFLSLCCNMFGNFF--VQRVLECSNTEEQEILTEHLASDLYNLCLDKSACRVI 238

Query: 207 QCRIKIISVHQQLRLNLQSIQCY 275
           Q  I+ + VH   RL+L+    Y
Sbjct: 239 QLAIQKLDVHLATRLSLELRDTY 261


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 200 MSTMPNKDNIRTPTTEVKPSINPVLQVVTAKST 298
           +S MP      +PTT+  P + P+  +VT  +T
Sbjct: 111 LSNMPGFPMGPSPTTQTPPGVPPISPIVTGPNT 143


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 200 MSTMPNKDNIRTPTTEVKPSINPVLQVVTAKST 298
           +S MP      +PTT+  P + P+  +VT  +T
Sbjct: 116 LSNMPGFPMGPSPTTQTPPGVPPISPIVTGPNT 148


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 176 IIAFKTPPMSTMPNKDNIRTPTTEVKPSINPVLQVVTAKST 298
           + AF   P+   PN+DNI+ P    +    PV++ V+ +ST
Sbjct: 867 VYAFVDTPVEPTPNEDNIQ-PVKPAELFRPPVVENVSVEST 906


>Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical
           protein F54F7.8 protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 188 KTPPMSTMPNKDNIRTPTTEVKPSINPVLQVVTAKSTM-VPIKVVPKVSISCYFSL 352
           + PP+ T+P+   I  P T  + +I+P+ Q+      + +P     +V  S  FSL
Sbjct: 21  QVPPLQTLPHLPQISHPLTTPQVAISPLSQLAQLPQHINMPNAPFDQVLNSSVFSL 76


>L15313-1|AAA28202.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK353.4 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +2

Query: 98  IQHSLRSENMLFIARY*LAFIQSFK*IIAFKTPPMSTMPNKDNIRTPTTEVKPSINPVLQ 277
           ++ S+ S+   +I     + + ++  I A +TPPMS   +      PT    P++  V +
Sbjct: 229 MESSIGSDISTYIVSSKRSEVNNYNMIEAGRTPPMSFSESYAQTAIPTANTPPTVVHVSK 288

Query: 278 VVTAKSTMVP 307
             +  S  +P
Sbjct: 289 PSSETSVSIP 298


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 200 MSTMPNKDNIRTPTTEVKPSINPVLQVVTAKSTMVP-IKVVPKVSISCYFSLSEAIQGND 376
           +S +P +++IR         +     VVT  S ++P + VV    ++C + L   +Q ND
Sbjct: 261 ISQLPVEEDIRMLRQVHLNMLIRTAGVVTIASGILPQLAVVKYDCVACGYLLGPFVQQND 320

Query: 377 SSL*IHICP 403
             +   ICP
Sbjct: 321 EEVRPTICP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,341,230
Number of Sequences: 27780
Number of extensions: 150731
Number of successful extensions: 370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)