Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e03
         (411 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   8.2  

>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 238 ERVKERLGQTEALEQTQANIGREEKQ 315
           +R+ E + QTE++E  +  IGR  ++
Sbjct: 11  KRLFEHMLQTESIEPVKMAIGRPSEK 36


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 115  YLVPLEVLFVLHNFNESHILNLSYKVASTDGHQAKKK 5
            +LVP      LH   E H+ +  YKV      Q  +K
Sbjct: 1228 HLVPQNCAPGLHYNPEEHMCDWKYKVKCVGRKQLAQK 1264


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 178 LNNEAFTSIIISFPFTTPLEFYLVPL 101
           +N++AF S+    P +   E Y  P+
Sbjct: 302 VNDDAFNSVATPTPTSVMTELYPSPV 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,878
Number of Sequences: 336
Number of extensions: 1719
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)