Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e02
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    29   0.45 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.45 
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.59 
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   3.1  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   4.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   5.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   7.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   9.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.6  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    24   9.6  

>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
 Frame = +2

Query: 116 NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYY 295
           NL L  +S  +     +SK +    ++  ++ ++   +    +  +S L   NL+EI + 
Sbjct: 14  NLGLSVTSRRNQILFYLSKALNLAHLLRSDSLQKSFLDALKQSATDSELLHKNLDEIKFL 73

Query: 296 QCLKM--QYVLDQ--NFDNDFILTVYRMANVVTKQVRPYNSIDEK 418
           Q  K+  + +L+Q  N  ND+ L V R+ + ++  V+  NS++ +
Sbjct: 74  QNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQ 118


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 295 IIINFFQVAKPQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 161
           ++I    +  P +R     I   +SN F  + ++N  + N+ RHN
Sbjct: 135 MLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHN 179


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 200 DETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFD 337
           D  +  + QN  Y+ + E+     N+E++DYY+ L+   ++D+N D
Sbjct: 28  DSQSDPLNQNL-YNIETENVKDL-NIEDVDYYEKLQNFKIVDENID 71


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 320 ERIAFLN-IDNNQFLPSCKTPKKIHFWHDSVRFVECVWPFHPKQPTFHEHV*T*LVCNNR 144
           E ++ LN +  N  + + +  K    + D+  +V+C   +     +  E     LVC+ +
Sbjct: 5   ESLSLLNSMQGNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFEATKSLKEEQ---LVCDPK 61

Query: 143 FTMTDVVQDFNELYDKIEN 87
           FT+ D +  F  +  K+++
Sbjct: 62  FTLLDSISAFEIMEPKMDS 80


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 119 DFNELYDKIENKYKLKYTFDC 57
           +FNE+++   ++Y LKY+  C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 28  KSIRSLLFVAQSKVYFNLYLFSILSYNSL 114
           K   S+LF  +++VYF+  + SIL + +L
Sbjct: 821 KGFGSILFTEENQVYFDPLINSILHFANL 849


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 308 FLNIDNNQFLPSCKTPKKIH 249
           F N+D N FL +   PKK++
Sbjct: 453 FQNMDTNTFLETITNPKKLY 472


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -1

Query: 311 AFLNIDN-NQFLPSCKTPKKIHFWHDSV---RFVECVWPFHPKQPTFHE 177
           AF++I   N++LP+    K + +   ++     +E VW F   QPTF +
Sbjct: 129 AFISIQFLNRYLPNTTAVKVVSWILQALLLFNLLESVWQFVRPQPTFDD 177


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 216  RLAVSSETTDISRTRLDIISVQ*SLYDD 133
            RLA+S +  ++ R   D+I +  SLY D
Sbjct: 1460 RLAISDDIFELYRRLDDVIDLNSSLYSD 1487


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 275 SCKTPKKIHFWHDSVRFVECVWPFHPKQPTFHEHV 171
           S K  KK++ W DS+ F   ++ FH K  +   H+
Sbjct: 413 SRKNAKKLNEWLDSLDFKLPIYLFHRKLESELSHL 447


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 113 NELYDKIENKYKLKYTFDCATNNNERILF 27
           NELYD +EN  + K + +  +  N R L+
Sbjct: 347 NELYDNVENGNEAKRSLEYNSAPNYRELY 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,580
Number of Sequences: 5004
Number of extensions: 40546
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)