Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e02
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     32   0.25 
02_05_0239 + 27101440-27101904                                         29   2.3  
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    28   4.1  
01_01_0793 - 6182125-6182625                                           28   4.1  
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877...    27   5.4  
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020...    27   9.5  

>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 236  YHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFDND 343
            ++   E F GF +LEE+   +CLK+   L  N  ND
Sbjct: 1264 FYGSKEDFAGFTSLEELVISRCLKLVSFLAHNDGND 1299


>02_05_0239 + 27101440-27101904
          Length = 154

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 452 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 360
           ++ R  P C+ AF + C    L +SPR P C
Sbjct: 102 RAVRVLPGCSRAFHQDCVDRWLTISPRCPVC 132


>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +2

Query: 179 REMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQC 301
           RE         ++I+++ H H K+ + +GFC+ + +    C
Sbjct: 348 RESKFRDSSHMRQIQEHRHEHLKSVTIIGFCSAKSLVELTC 388


>01_01_0793 - 6182125-6182625
          Length = 166

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 452 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 360
           ++ R  PCC  AF   C    L L P  P C
Sbjct: 112 ETVRALPCCPHAFHARCVDAWLRLRPTCPLC 142


>02_04_0595 -
           24186714-24186898,24187004-24187150,24187647-24187718,
           24188061-24188204,24188769-24188840,24189233-24189304,
           24189805-24189876,24190214-24190285,24190416-24190487,
           24190685-24190756,24190957-24191031,24191226-24191372,
           24191670-24191877,24192240-24192368,24192454-24192663
          Length = 582

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 146 DYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKN-ESFLGFCNLEEIDYYQCLKM 310
           +YC +I    +  +S +S+ T+   + ++   A+  E+F    NL  +D  +CLK+
Sbjct: 168 NYCDMISEHGLGILSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKI 223


>01_06_0253 -
           27901204-27901251,27901673-27901744,27901944-27902030,
           27902484-27902574,27903706-27903769,27904354-27904461,
           27905124-27905181,27905813-27905956,27906307-27906372,
           27907227-27907299,27908439-27908500,27908923-27909000,
           27909124-27909229,27909317-27909483,27909961-27910048,
           27911204-27911313,27911833-27911928,27912354-27912461,
           27912568-27912711,27913850-27914065
          Length = 661

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 411 SILLYGLTCFVTTLAILYTVKIKSLSKFWSRT 316
           S++  GLT  +  + I Y +  + L+ FW  T
Sbjct: 152 SLIYEGLTLVILVMDIFYPLSYEGLNLFWKNT 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,094,198
Number of Sequences: 37544
Number of extensions: 211438
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)