Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e02
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 29   1.8  
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)                    27   7.4  
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)                27   7.4  
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +2

Query: 170 KRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFDNDFI 349
           KR+R+++     TAKR R+      K+  F   C +  + +Y+     +     ++ND  
Sbjct: 771 KRIRDLTTTDTTTAKRFRKELDQLRKD--FESACEIHSL-FYEFENPDHDALDAWENDLN 827

Query: 350 LTVYRMANVVTKQVR 394
             VY +   + K ++
Sbjct: 828 NVVYTLQEAIEKDIK 842


>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 414 SSILLYGLTC--FVTTLAI--LYTVKIKSLSKFWSRTYCIF 304
           S ILL+ L    F+  +A+  +YT+ + S+ + W   YCIF
Sbjct: 14  SKILLFSLATSDFLVGIALQPMYTLHLMSMVRDWPSLYCIF 54


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 92  QFYRTTR*NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEH 235
           + Y  T  N +LR +  SDY     ++++ +M+ V DET+     +EH
Sbjct: 89  RLYSQTHPNFDLRETELSDYYRPSSNQKMGKMAYVGDETSFIHGVDEH 136


>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
          Length = 415

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 223 SNAFGRFIRNNRHFTNTFRHN 161
           S+ FG+F R N HF  T RH+
Sbjct: 25  SSHFGQFSRPNSHFEQTNRHS 45


>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +2

Query: 254 SFLGFCNLEEIDYYQCLKMQYVLDQNFDNDFILTVYRMANVVTKQVRPYNSIDEKHH 424
           SF G  N E++ +       Y+L+    N   LT   + NV  KQVR    + EKHH
Sbjct: 425 SFTGL-NQEQVAFLTRKHHIYLLNNGRINISALTPNNVENVALKQVR---RLTEKHH 477


>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 262 QKRFIFGMIVFVLSNAFGRFIRNNRHFTNTF 170
           QKR I   +++ +S  F  F++   HF+NTF
Sbjct: 3   QKRLIGSSVLYEIS--FIAFVKKEAHFSNTF 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,077
Number of Sequences: 59808
Number of extensions: 283382
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)