Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e01
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    24   3.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   5.4  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    22   9.5  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 183 TQLVSSKNSKGEHIHGFKSRSG*NHNSHNVF*S*YETLLIKVK*IEEKSKHIHFVRKH 10
           +QL+  KNS    I  +K+      N   +  + YET   +   IEEK K+I    K+
Sbjct: 94  SQLLKVKNS----IDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFEKN 147


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 173  YRLKIAKESIYTVLNLGQGKTTI 105
            +R  +AKE +  V + G GKTT+
Sbjct: 1180 WRCLLAKEPVLLVGDTGCGKTTV 1202


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 143 ICSPLLFLDDTNC 181
           +CS +L  DD+NC
Sbjct: 199 VCSDVLLNDDSNC 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,901
Number of Sequences: 5004
Number of extensions: 10782
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)