Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30e01
         (224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   5.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   7.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   9.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 128 DLKPCICSPLLFLDD 172
           D  P IC  + FLD+
Sbjct: 223 DALPYICEDMRFLDE 237


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 53  YFTFINNVSYYD 88
           Y  F+N  +YYD
Sbjct: 134 YSAFVNLTAYYD 145


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 128 DLKPCICSPLLFLDD 172
           D  P IC  + FLD+
Sbjct: 223 DALPYICEDMRFLDE 237


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  FTFINNVSYYD*KTLCELWFYPDRDLK 136
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  FTFINNVSYYD*KTLCELWFYPDRDLK 136
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  FTFINNVSYYD*KTLCELWFYPDRDLK 136
           + F+N + +YD   L + +F    D K
Sbjct: 181 YEFLNAIHHYDDIWLPDTYFIMHGDFK 207


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  FTFINNVSYYD*KTLCELWFYPDRDLK 136
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 99  CVNCGFTLTEI*NRVYALLCYF*TILIVYED 191
           C+N   +  +  N +  ++C+   +  +YED
Sbjct: 118 CINANKSTDKCENGLNFIICFSKLLSDMYED 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,371
Number of Sequences: 438
Number of extensions: 671
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)