Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d13
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 1.6
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 2.8
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 2.8
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 4.9
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 25 4.9
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 4.9
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 6.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 6.5
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 6.5
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 25 6.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.5
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 35 ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEK 130
+N KP + YN DY E K F T+ ++ ++
Sbjct: 52 SNCSKPLVGYNSDYLDEHAKDGFRTSVIVRQR 83
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 2.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -2
Query: 238 QQRKFVFASVVFWQAIIKKIRKQFSASI 155
Q+R F+++ ++ W A+ + +R F+ S+
Sbjct: 437 QERNFLYSKIMLWVALDRALRIAFTRSL 464
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 101 FHTNKVIFEKLDPYATNINRCRKL 172
F V+FE L P+ TN+ R KL
Sbjct: 518 FSLGMVLFELLHPFQTNMERATKL 541
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 215 RKNKFALLFRLLEPVIKQTGTSSALTAVSDQSRWLEIN 328
R ++ A LFR +I A S Q RW+ +N
Sbjct: 141 RASRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVN 178
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 171 NFLHLLIFVAY 139
NFLHLLIF AY
Sbjct: 228 NFLHLLIFTAY 238
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +2
Query: 296 VSDQSRWLEINQFSAWERRDNQYAHKWLIKVAGADMGQQILFI 424
V Q+R L+ + S W D + + W+ + G +LF+
Sbjct: 136 VDPQARRLQEEELSPWIMEDFEGKNTWVSTMEGGQSSAYVLFM 178
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/76 (22%), Positives = 28/76 (36%)
Frame = +2
Query: 65 NEDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRKLLTDFFDYCLPKYYRRKNKFALLFR 244
N DY C K R+ T K F L+ + + D D L + K+ +
Sbjct: 416 NGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVDLKDVVLNFAWEPKSDRFAIIS 475
Query: 245 LLEPVIKQTGTSSALT 292
+ V+ T + L+
Sbjct: 476 ANDQVLNSTNVKTNLS 491
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 358 IVSSFPSGKLIDLEP 314
+VSSFP+ +IDL+P
Sbjct: 37 LVSSFPNDSIIDLQP 51
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 53 FLFYNEDYY--CEKPKRYFHTNKVIFEKLDPYATNIN 157
FL Y YY ++Y T K I +K+DPY +I+
Sbjct: 209 FLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSIS 245
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 283 GVNGGIRPKPVARDQ 327
G++GG+RP P A DQ
Sbjct: 115 GLDGGVRPLPAAVDQ 129
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 50 PFLFYNEDYYCEKPKRYFHTNKV 118
PF+ +N D EK K YF N++
Sbjct: 1141 PFVCWNADSSMEKMKDYFDANQL 1163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,539
Number of Sequences: 5004
Number of extensions: 43408
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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