Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d13
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 RNVVGVNGGIRPKPVARDQSIFR 339
           +N VG N  I+P+PVA+ Q+I++
Sbjct: 595 QNTVGGNAYIQPQPVAQQQTIYQ 617


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 RNVVGVNGGIRPKPVARDQSIFR 339
           +N VG N  I+P+PVA+ Q+I++
Sbjct: 240 QNTVGGNAYIQPQPVAQQQTIYQ 262


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 RNVVGVNGGIRPKPVARDQSIFR 339
           +N VG N  I+P+PVA+ Q+I++
Sbjct: 192 QNTVGGNAYIQPQPVAQQQTIYQ 214


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 RNVVGVNGGIRPKPVARDQSIFR 339
           +N VG N  I+P+PVA+ Q+I++
Sbjct: 920 QNTVGGNAYIQPQPVAQQQTIYQ 942


>Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical
           protein F44G3.1 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 275 TSSALTAVSDQSRWLEINQFSAWERRDNQYAHKWLIKVAGADMGQQILFIIKPVT 439
           T SA+T    Q+ +  IN+ SA  R +N+   K L K         I+F+  PVT
Sbjct: 218 TISAITFFGAQT-YQHINRLSAISRSENKELQKQLFKTLVIQTIIPIIFMYIPVT 271


>AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical
           protein Y62H9A.12 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
 Frame = +2

Query: 86  KPKRYFHTNKVIFEKL------DPYATNINRCRKLLTDFFDYCLPKYYRRKNKFALLFRL 247
           K KR F  N  I E L      D   T   +C   +T  F  C   YYR++NK       
Sbjct: 35  KTKRTFSFNAGIEELLMNAQNRDLNVTMTQKCSDPVTFKFGKCDIAYYRQENK----QNE 90

Query: 248 LEPVIKQTGTSSAL--TAVSDQSRWLEINQFSAWERRDNQYAHKWLIKVAGA-DMGQQIL 418
           L  V  Q GT   L  T ++  + W            +N    K+  K +GA +  +  L
Sbjct: 91  LTLVFDQNGTLFLLNATRIACDNGWNPDGAIHFKVYTENISTCKFTFKTSGAPEKPEDYL 150

Query: 419 FIIKPV 436
           FI  P+
Sbjct: 151 FIDTPI 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,076
Number of Sequences: 27780
Number of extensions: 245618
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)