Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d12
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 1.8
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 27 3.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 4.2
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 26 5.5
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 26 5.5
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 7.3
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 25 9.7
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 173 IKNQKIEKLDASMVVNGDNVM--LKIVIVTSTNDLEGIKICGIHGQKGVFNGGEDLTEWM 346
+ +++ +++A V+ D L + ++ + L + G+ QK F G +EW+
Sbjct: 222 VDHKRDSEINAVTAVSADGSFSPLTETLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEWI 281
Query: 347 AEDGTHAQICLSPV-SFLSRQSNFD 418
D T IC S S +S S+F+
Sbjct: 282 PND-TVDYICNSDASSVVSNLSDFE 305
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 30 TTDLCCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTFTKCT-FTLDKLKIKKLKNSTP 206
TT T + W A + + T G L IL + + +TLDKLKI NS P
Sbjct: 77 TTTSLSTAIIHW-AAKSYVSEATLKGNVLSLNTFNILGKKRLSQYTLDKLKIPDTNNSRP 135
Query: 207 AWWLTATTL 233
L +TT+
Sbjct: 136 FANLESTTV 144
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 460 VVISTAHHIFALNFIKIRLARQKRDG 383
V + T + IF +N +K+R RQ DG
Sbjct: 18 VALDTGYKIFQINPLKLRAQRQFNDG 43
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 395 LSRQSNFDKIERKYV---VRGGNHDDPHAKRYPIFNIPYMLFNNTPDNIFKEFIK 550
LSR S+ + +Y+ R GN D H YP+ N T N++K FI+
Sbjct: 509 LSRFSDCHAVLLRYLDLLARSGNVDLLHLHAYPVICSVSSHTNFTFSNVYKAFIE 563
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = -3
Query: 538 FENIVGCIIK*HVWY--VEDGITLGVRVV--VISTAHHIFALNFIKIRLARQKRDGRQAY 371
F + VG I + Y G+ + V ++ +I + A+ FIK +K DG A
Sbjct: 162 FGSTVGSFIAFGINYHSTSTGVPMAVYIIFIIIMACAVLLAILFIKSPSDVRKSDGTSAL 221
Query: 370 LGVRTIFGHPLGQVFAAVK 314
FG L +F A K
Sbjct: 222 SPSNKTFGQELWGLFEAAK 240
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 100 AVVHPINFCVAHQHTGHVQHKSVV*RNVILVG 5
A+ I VAH H+ + H+ + NVIL G
Sbjct: 615 AIFFQIALAVAHLHSFDIIHRDIKDENVILEG 646
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 328 FAAVKHTFLTVNATYFYSFQI 266
F+ KH+F+ + T FYSF +
Sbjct: 180 FSLQKHSFIVIYKTAFYSFYL 200
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 488 FNIPYMLFNNTPDN-IFKEFIKTNHTGH-EKV 577
FNI L NNT DN I ++ + H H EK+
Sbjct: 219 FNILKELLNNTKDNGIDQQIVHKEHISHLEKI 250
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 477 VIPSSTYHTCYLIIHPTIFSKNL 545
++ S+ Y++C ++IH +KNL
Sbjct: 459 ILTSAIYYSCLILIHRHSLTKNL 481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,497
Number of Sequences: 5004
Number of extensions: 58436
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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