Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d12
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     29   4.3  
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    28   5.7  
07_03_0606 + 19912090-19913430                                         28   5.7  
06_01_0555 + 3952502-3954262                                           28   5.7  
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928...    28   7.6  

>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -1

Query: 93  YTQLIFALLTSTPAMYSTSPSSSAT 19
           +++L+F LL ST A+YS++ SSS++
Sbjct: 71  FSRLLFFLLFSTTALYSSTSSSSSS 95


>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
            6027187-6027258,6027354-6027425,6027784-6027855,
            6027980-6028051,6028134-6028205,6028483-6028554,
            6028791-6028865,6028970-6029041,6029134-6029199,
            6029267-6029332,6029409-6029453,6029542-6029606,
            6029697-6030076,6030455-6030653,6030725-6030883,
            6030966-6031084,6031156-6031200,6031226-6031791,
            6031871-6032021,6032117-6032454,6033702-6033765,
            6034329-6034370,6035572-6035575,6035853-6036039,
            6037252-6037323,6037687-6037758,6037867-6037938,
            6038019-6038090,6038651-6038725,6038815-6038886,
            6038988-6039053,6039163-6039228,6039348-6039392,
            6039469-6039533,6039615-6039994,6040070-6040202,
            6040354-6040512,6040599-6040717,6040805-6041015,
            6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 332  LTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHD 460
            +TEW   DG       S  S  SRQ   D +     + G +HD
Sbjct: 1004 ITEWQYRDGNSTN-SESTTSEFSRQKEIDPLTMSPTITGSSHD 1045


>07_03_0606 + 19912090-19913430
          Length = 446

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  DDGLVLYMAGVLVSNAKINWVYDGRRY 109
           D G  L   G + +N  + WVY+ RRY
Sbjct: 249 DTGCWLLNEGTMQANGSLYWVYEDRRY 275


>06_01_0555 + 3952502-3954262
          Length = 586

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 419 KIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPDNIFKEFIKTNHTGHEKVE 580
           +I R     GG+ DD +     +FN+P  L  + P+    +FI      H + E
Sbjct: 26  QIRRSLQEDGGDDDDDNGIPVSVFNVPKQLQAHKPEAYVPQFIALGPYHHWRPE 79


>10_08_0003 -
           13992276-13992311,13992461-13992598,13992682-13992852,
           13992926-13992989,13993404-13993552,13993700-13993753,
           13993894-13994034,13994134-13994412,13994518-13994743,
           13995328-13995734
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 224 DNVMLKIVIVTSTNDLEGIKICG 292
           D V +K+++  +TN + G+ +CG
Sbjct: 467 DRVYMKVIVCANTNKVLGVHVCG 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,469
Number of Sequences: 37544
Number of extensions: 370573
Number of successful extensions: 1036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)