Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d12
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093696-1|AAH93696.1| 1173|Homo sapiens ubiquitination factor E... 38 0.032
AL590639-5|CAI14687.1| 1173|Homo sapiens ubiquitination factor E... 38 0.032
AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E... 38 0.032
AL096841-2|CAI21860.1| 1173|Homo sapiens ubiquitination factor E... 38 0.032
AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E... 38 0.032
AF331520-1|AAK69622.1| 1173|Homo sapiens ubiquitin-fusion degrad... 38 0.032
AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion degrad... 38 0.032
AB028839-1|BAB40446.1| 1173|Homo sapiens homzygously deleted in ... 38 0.032
AB014584-1|BAA31659.3| 1218|Homo sapiens KIAA0684 protein protein. 38 0.032
S57551-1|AAB19934.2| 1073|Homo sapiens guanylate cyclase-coupled... 30 8.4
AL353596-3|CAI17914.1| 632|Homo sapiens HBS1-like (S. cerevisia... 30 8.4
AJ459827-1|CAD30874.1| 632|Homo sapiens HBS1-like protein protein. 30 8.4
>BC093696-1|AAH93696.1| 1173|Homo sapiens ubiquitination factor E4B
protein.
Length = 1173
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 311 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 370
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 371 GFIQELVRTTHQDEE 385
>AL590639-5|CAI14687.1| 1173|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1173
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 311 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 370
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 371 GFIQELVRTTHQDEE 385
>AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 440 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 499
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 500 GFIQELVRTTHQDEE 514
>AL096841-2|CAI21860.1| 1173|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1173
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 311 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 370
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 371 GFIQELVRTTHQDEE 385
>AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 440 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 499
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 500 GFIQELVRTTHQDEE 514
>AF331520-1|AAK69622.1| 1173|Homo sapiens ubiquitin-fusion
degradation protein 2 protein.
Length = 1173
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 311 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 370
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 371 GFIQELVRTTHQDEE 385
>AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion
degradation protein 2 protein.
Length = 1302
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 440 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 499
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 500 GFIQELVRTTHQDEE 514
>AB028839-1|BAB40446.1| 1173|Homo sapiens homzygously deleted in
neuroblastoma-1/UFD2 protein.
Length = 1173
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 311 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 370
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 371 GFIQELVRTTHQDEE 385
>AB014584-1|BAA31659.3| 1218|Homo sapiens KIAA0684 protein protein.
Length = 1218
Score = 37.9 bits (84), Expect = 0.032
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 EDGTHAQICLSP-VSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPD 526
E+ ++C P VS L I +V G+ P + + P F +PYML N P
Sbjct: 356 EEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPY 415
Query: 527 NIFKEFIKTNHTGHE 571
+E ++T H E
Sbjct: 416 GFIQELVRTTHQDEE 430
>S57551-1|AAB19934.2| 1073|Homo sapiens guanylate cyclase-coupled
enterotoxin receptor protein.
Length = 1073
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -3
Query: 496 YVEDGITL-----GVRVVVISTAHHIFALNFIKIRLARQKRDGRQAYLGVRTIFGHPL 338
Y+ED +T V V+ +S + + +F + L+ KRD R AYL +FGH L
Sbjct: 280 YLEDNVTAPDYMKNVLVLTLSPGNSLLNSSFSR-NLSPTKRDFRLAYLNGILVFGHML 336
>AL353596-3|CAI17914.1| 632|Homo sapiens HBS1-like (S. cerevisiae)
protein.
Length = 632
Score = 29.9 bits (64), Expect = 8.4
Identities = 9/38 (23%), Positives = 24/38 (63%)
Frame = +2
Query: 104 RYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVV 217
RY +++C ++YK ++Y RQ+++ K +++ + +
Sbjct: 570 RYPLKSCKRRTLDLYKTFLYSRQVQDVKDKEISPLVAI 607
>AJ459827-1|CAD30874.1| 632|Homo sapiens HBS1-like protein protein.
Length = 632
Score = 29.9 bits (64), Expect = 8.4
Identities = 9/38 (23%), Positives = 24/38 (63%)
Frame = +2
Query: 104 RYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVV 217
RY +++C ++YK ++Y RQ+++ K +++ + +
Sbjct: 570 RYPLKSCKRRTLDLYKTFLYSRQVQDVKDKEISPLVAI 607
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,488,080
Number of Sequences: 237096
Number of extensions: 1892279
Number of successful extensions: 5709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5709
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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