Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d12
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   2.9  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    29   3.9  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    29   3.9  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 475
           GGE + +   E G H +        LSR  N + IE+ +V+RG      HAK
Sbjct: 344 GGETIKQINQESGAHCE--------LSRDPNTNPIEKTFVIRGSEAQVEHAK 387


>AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical
           protein C04E12.5 protein.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 59  VLVSNAKINWVYDGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVNGDNVML 238
           V++S   I  + + R   +ETC N   N + + V       Q+++KL  S+++  D  +L
Sbjct: 195 VVISIPGIEEIVNNRAGVVETCPNFLINCFNIPVEKSLTIEQQMDKLYISIMLQKDIKVL 254

Query: 239 KIVIVTSTNDLEGIKI 286
           K  +    +++E  KI
Sbjct: 255 KTKL-KGVSNVESFKI 269


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 372 YACRPS-RFCLASLILIKLSANMWCAVEITTTRTPS 476
           + CRPS RFC+ +L ++ ++   +   ++T   TPS
Sbjct: 465 FICRPSVRFCMLNLYVVYIAIAFYGCSQLTPNLTPS 500


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 95  DGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVNGDNVMLKIVIVTSTNDLE 274
           DG  +     T   + + KV+ YF+++    IEK       +GD     + IV + +D +
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEK-SIEKEFSGDLQKSYLTIVRAASDKQ 246

Query: 275 GIKICGIH-GQKGVFNGGEDL 334
                 +H   KG+     DL
Sbjct: 247 KFFAQQLHASMKGLGTRDNDL 267


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 95  DGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVNGDNVMLKIVIVTSTNDLE 274
           DG  +     T   + + KV+ YF+++    IEK       +GD     + IV + +D +
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEK-SIEKEFSGDLQKSYLTIVRAASDKQ 246

Query: 275 GIKICGIH-GQKGVFNGGEDL 334
                 +H   KG+     DL
Sbjct: 247 KFFAQQLHASMKGLGTRDNDL 267


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +2

Query: 410 NFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPDNIFKEFIKTNHTGHEKVEGTR 589
           N D+ + +YV  G ++D+ H    P+      + N  P   F  F KTN  G+E++ G  
Sbjct: 60  NSDEEKGRYVAVGFSNDE-HMGNEPVIECS-AIGNQKPSMKFS-FDKTNGKGNERIAGDY 116

Query: 590 FDQWTKNQSFVGN 628
              ++ N +   N
Sbjct: 117 TAHFSNNTAVFEN 129


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +2

Query: 410 NFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPDNIFKEFIKTNHTGHEKVEGTR 589
           N D+ + +YV  G ++D+ H    P+      + N  P   F  F KTN  G+E++ G  
Sbjct: 60  NSDEEKGRYVAVGFSNDE-HMGNEPVIECS-AIGNQKPSMKFS-FDKTNGKGNERIAGDY 116

Query: 590 FDQWTKNQSFVGN 628
              ++ N +   N
Sbjct: 117 TAHFSNNTAVFEN 129


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 432 NMWCAVEITTTRTPSVIPSSTYHTCYLIIHPTI 530
           ++W  +E    +     P +T H CYL++HPT+
Sbjct: 638 DVWQEMERVDEQIKLDFPGTTAH-CYLLLHPTL 669


>Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical
           protein K01D12.6 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
 Frame = +2

Query: 116 ETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVNG---------DNVMLKIVIVTSTND 268
           E CT     + KV+     +KN+  + ++ S+ + G         D ++L +  +    D
Sbjct: 119 ELCTELRKTIEKVHHNLEMVKNRSSKDMERSIKIEGILKGLKQVEDEIVLLVPQMEDFRD 178

Query: 269 --LEGIKICGIHGQKGVFNGGEDLT-EWMAEDGTHAQI----C-LSPVSFLSRQSNFDKI 424
             +E   + G  G  G    G   T   +++D   + +    C +  + F+S  +N DK 
Sbjct: 179 DNMEFYSVSGGSGYAGSVRTGRSRTLSVLSDDSFRSAVEEFACDIDDIDFVSDAANLDKN 238

Query: 425 ERKYVVRG 448
           E +++  G
Sbjct: 239 ELRFLDEG 246


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 475
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 295 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 338


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 475
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 358 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 401


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 475
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 336 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 379


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 377 LSPVSFLSRQSNFDKIERKYVVRGGNHDDPH-AKRYPIFNIPYMLFNNTPDNIF 535
           ++P +F   Q+NF    +   V G +  +P+  +  P  NIP+ ++ N P N++
Sbjct: 460 IAPFAFFPYQNNFQMAPQN--VPGPSLYNPYPVQANPAPNIPFNVYQNIPFNLY 511


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
 Frame = +2

Query: 308 GVFNGGEDLTEWM-----AEDGTHAQICLSPV-SFLSRQSNFDKIERKYVVR----GGNH 457
           G FN   +LT++      +EDG       S + S  S    FD+I   + ++    GG+H
Sbjct: 96  GNFNNTSNLTQYKYSAQPSEDGNFLHFSYSAIKSCPSEWEPFDRIRGGWCIKVFRQGGSH 155

Query: 458 DDPH 469
           DD H
Sbjct: 156 DDAH 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,416
Number of Sequences: 27780
Number of extensions: 335819
Number of successful extensions: 1164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)