Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d12
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.21 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.21 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.64 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 42  CCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTF 146
           CC W +CW  T   I         +K  P   LT+
Sbjct: 488 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 522


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 42  CCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTF 146
           CC W +CW  T   I         +K  P   LT+
Sbjct: 541 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 575


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 453 FPPRTTYLRSILSKLDWRDKNETGDKHIWACVPSSAIH 340
           +PP +  +R  +S   + D   T  K +   +P+ AIH
Sbjct: 367 YPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIH 404


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 456 TTTRTPSVIPSSTYHTCYLIIHPTIF--SKNLLKQTTLD 566
           TTT +P+  PS+T  T     H  +F  +K++L +  +D
Sbjct: 381 TTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHNVD 419


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 420 LSKLDWRDKNETGDKHIWACVPSSA 346
           L  L W   N  G   +W+ VP  A
Sbjct: 84  LGFLAWAKHNPRGKDALWSLVPHMA 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,809
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)