Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d11
         (444 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q01X73 Cluster: Amino acid permease-associated region; ...    33   2.8  
UniRef50_A1TXN0 Cluster: Phage integrase family protein; n=1; Ma...    33   3.7  
UniRef50_A0PPI6 Cluster: Glycolipid sulfotransferase; n=1; Mycob...    32   6.4  
UniRef50_P15345 Cluster: Regulatory protein flaEY; n=2; Caulobac...    31   8.5  
UniRef50_Q57576 Cluster: Acetyl-CoA decarbonylase/synthase compl...    31   8.5  

>UniRef50_Q01X73 Cluster: Amino acid permease-associated region;
           n=1; Solibacter usitatus Ellin6076|Rep: Amino acid
           permease-associated region - Solibacter usitatus (strain
           Ellin6076)
          Length = 461

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 297 SFCHFIRGGVTDLWRIEGWNR-SLSSHVIANPSQNLP 190
           +F  FI   V  LW  +GWN  S+ S  I +P +NLP
Sbjct: 211 TFSGFIAALVAALWAYDGWNNVSMVSSEIKDPQKNLP 247


>UniRef50_A1TXN0 Cluster: Phage integrase family protein; n=1;
           Marinobacter aquaeolei VT8|Rep: Phage integrase family
           protein - Marinobacter aquaeolei (strain ATCC 700491 /
           DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
           (strain DSM 11845))
          Length = 396

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 229 QRPVPAFNPPEVGHSPSDEMAKRL--GELKSYWTQLED-PLDERILNTLKAISILSGDTR 399
           + P     P ++G S     ++ L   E+K +W  LED  LD  +   LKAI +L+G  R
Sbjct: 175 ENPCYGLQPSKLGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAI-LLTGLRR 233

Query: 400 GDL 408
           G++
Sbjct: 234 GEI 236


>UniRef50_A0PPI6 Cluster: Glycolipid sulfotransferase; n=1;
           Mycobacterium ulcerans Agy99|Rep: Glycolipid
           sulfotransferase - Mycobacterium ulcerans (strain Agy99)
          Length = 310

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +1

Query: 235 PVPAFNPPEVGHSPSDEMAKRLGELKSYWTQLEDPLDERILNTLKAISILSGDTRGDLSG 414
           P P F PP  G  P   MAK +G L +           R L  +        D R DL G
Sbjct: 150 PGPGFPPPHGGPGPMPPMAKHMGSLSNILHHFNTVWSRRQLPNVSMFHYT--DYRADLVG 207

Query: 415 KYKHLVRISG 444
           +   L+R++G
Sbjct: 208 E---LIRLAG 214


>UniRef50_P15345 Cluster: Regulatory protein flaEY; n=2;
           Caulobacter|Rep: Regulatory protein flaEY - Caulobacter
           crescentus (Caulobacter vibrioides)
          Length = 954

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 88  DCEYPPLKRN--YQLIYPIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 252
           D E P  K N  + +        S  T+DLSE+G T   ++ V  YM G+     FN
Sbjct: 172 DDEIPRFKGNVSFDISVKSFGVTSTVTMDLSEMGATPRTMSNVVSYMNGKMKAAGFN 228


>UniRef50_Q57576 Cluster: Acetyl-CoA decarbonylase/synthase complex
           subunit gamma; n=2; Methanococcales|Rep: Acetyl-CoA
           decarbonylase/synthase complex subunit gamma -
           Methanococcus jannaschii
          Length = 488

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = +1

Query: 211 GDYMTGQRPVPAFNPPEVGHSPSDEMAKRLGELKSYWTQLEDPLDERILNTLKAISILSG 390
           GD +  +  +  FNP  +G   SDE+++   E+K+   ++E+ + ER    LK   I+  
Sbjct: 83  GDEVMYRYQLSFFNPTPIGVDISDELSEE--EIKNRAKEIENFVFERTGEKLKLDFIVIR 140

Query: 391 DTRGDLSGKYKHLVRI 438
           +  GD+  K+K  + I
Sbjct: 141 NASGDVE-KFKKAIEI 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,325,294
Number of Sequences: 1657284
Number of extensions: 8651918
Number of successful extensions: 24802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24795
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)