Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d11
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   1.7  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   3.0  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   4.0  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   4.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   5.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   6.9  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    24   9.1  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   9.1  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    24   9.1  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    24   9.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   9.1  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 247 FNPPEVGHSPSDEMAKRLGELKSYWTQLEDPLDERILNTL--KAISILSGDTRGDLSGKY 420
           F PP  GHSP  E  K+ G L S     E  + + I  +L  + I  +S   +  + G +
Sbjct: 413 FVPPSQGHSPLLEKIKKQGSLPSTTPVNEGGISDIIPKSLYDQVIRFISTFYKAPVFGIF 472

Query: 421 KHLVR 435
           +  +R
Sbjct: 473 RKTLR 477


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 255 RIEGWNRSLSSHVIANPSQNLPCQSNF 175
           R + W+RSLS+++  + S + P  S+F
Sbjct: 113 RKKSWSRSLSNNISLSQSSSSPATSSF 139


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 270 VTDLWRIEGWNRSLSSHVIANPSQNLPCQS 181
           + D+WR EGW R   S +  N  + +P  S
Sbjct: 329 IRDIWRSEGW-RKYYSGMATNFIRTIPASS 357


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 292 KRLGELKSYWTQLEDPLDERILNTLKAISILSGDTRG 402
           K L E K  + ++E  LD+R+  T   +S L GD +G
Sbjct: 719 KNLSEAKPIFDEIE-LLDKRLSETKTELSDLQGDLQG 754


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 271 SPSDEMAKRLGELKSYWTQLEDPLDERIL 357
           SP+     R+ E++SY+ Q+ D  D +++
Sbjct: 573 SPTKHYIARMNEIRSYFPQVRDGWDLKLI 601


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 145 SHSHDTIDLS-EIGLTREVLTGVGDYMTGQRPVPAFNPPEVGHSPSDEMAKRLGELKSYW 321
           SH H+T   + ++   REV   +    +  R         +     D+M++RLG L    
Sbjct: 223 SHRHETATSNKQVSCFREVPAWIKQCQSQCRGFLTRKCVSIEKLRRDDMSERLGWLPKLE 282

Query: 322 TQLEDPLDERILNTLK 369
           T+L    DE  L  LK
Sbjct: 283 TKLSSISDEERLILLK 298


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +1

Query: 133 PIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFNPPEVGHSPSDEMAKRLGELK 312
           P    H H      +IG+  E   G G  +   + +     P    +PS   A  + +L+
Sbjct: 340 PTGVKHLHKAAKEFDIGVYFEA-NGHGTVLFSDKALANLAHPFF--TPSPVQAAAIEQLQ 396

Query: 313 SYWTQLEDPLDERILNTLKAISILS 387
           SY   +   + + I + L  IS+L+
Sbjct: 397 SYSVLINQAIGDAISDLLATISVLN 421


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 151 SHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFNPPEVGHSPSDEMAKRLGELKS 315
           +HD + L E+   + +   VGD   G      F+   VG S S+   K + +LKS
Sbjct: 128 NHDEV-LMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELPQKLVDQLKS 181


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 271 SDRPLED*RLEPVFVQSCNRQPQSEPPLS 185
           S+  +ED RL P  ++  N Q  S PP S
Sbjct: 642 SNVEMEDTRLLPASLELANTQGASNPPTS 670


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 280 DEMAKRLGELKSY---WTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVRI 438
           DE  K + E +     W +  D   E +LN ++ I  +  D R DLS   + + R+
Sbjct: 205 DEWRKSMDEWRKSTDEWRKSTDERLENLLNIVREILDVQRDMRNDLSNLTRKVDRM 260


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 277 SDEMAKRLGELKSYW-TQLEDPLDERILNTLKAISILSGDTRGDLSGKY 420
           SD+  KR  ++K    T+L+D   E     L  I    GD  G+L  KY
Sbjct: 135 SDDKKKRKKKVKEIRATRLDDKTVEEYEFILAQIDNYDGDQLGELMKKY 183


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 271 SPSDEMAKRLGELKSYWTQLEDPLDERILNTLKAISILSGD-TRGDLSG 414
           +P      +  E+K  +  L+DP  ++  +T  A +  +G+ T GD  G
Sbjct: 118 NPDKAAQDKFVEIKQAYEVLQDPKKKKAFDTYGAGAFKNGEFTGGDFEG 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,184
Number of Sequences: 5004
Number of extensions: 35935
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)