Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d09
(448 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 214 8e-55
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 72 5e-12
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 53 2e-06
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 50 2e-05
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 46 5e-04
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 43 0.003
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 42 0.008
UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosai... 42 0.008
UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow... 41 0.011
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 40 0.025
UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 39 0.043
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 36 0.30
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 36 0.53
UniRef50_A0W712 Cluster: Glycosyl transferase, group 1; n=1; Geo... 33 3.7
UniRef50_A5AAN2 Cluster: Contig An04c0090, complete genome. prec... 32 4.9
UniRef50_UPI0000D9AAC6 Cluster: PREDICTED: hypothetical protein;... 31 8.6
UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and... 31 8.6
UniRef50_A6C699 Cluster: Putative uncharacterized protein; n=2; ... 31 8.6
UniRef50_A0QII3 Cluster: Oxidoreductase, short chain dehydrogena... 31 8.6
UniRef50_Q92570 Cluster: Orphan nuclear receptor NR4A3; n=26; Eu... 31 8.6
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 214 bits (522), Expect = 8e-55
Identities = 111/145 (76%), Positives = 112/145 (77%)
Frame = +2
Query: 14 MEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQXXXXXXXXXXXXXXXXXXX 193
MEEIVPLVVSAASAIPSLV+AFSSSKPPQTD P ARSMDMQ
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAP 60
Query: 194 XXXXXXXXXXXXQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 373
QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE
Sbjct: 61 PPPLGSSLGRSPQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 120
Query: 374 AVVFPSAPSLKIPVTVDLCWTTADV 448
AVVFPSAPSLKIPVTVDLCWTTADV
Sbjct: 121 AVVFPSAPSLKIPVTVDLCWTTADV 145
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 72.1 bits (169), Expect = 5e-12
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +2
Query: 242 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 421
+PFQ L++D+TGTE+ S+++ S P V ++ + YR A L +LEA V P+A S P TV
Sbjct: 68 LPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRHARLTSLEAFVQPTASSATYPQTV 127
Query: 422 DLCWTTADV 448
DLCWT V
Sbjct: 128 DLCWTIDSV 136
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 53.2 bits (122), Expect = 2e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +2
Query: 242 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 421
+PFQ +++DLT ET S+ + S P S+ Y A L +LE VFP PS P++
Sbjct: 71 LPFQFIFYDLTNAETGFTSLDLASKPPFLSLTSPYAYAVLQSLELTVFPKNPSYTYPMSF 130
Query: 422 DLCWTTADV 448
D W ++ V
Sbjct: 131 DAHWHSSSV 139
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 50.0 bits (114), Expect = 2e-05
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +2
Query: 236 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 415
+++PFQ DL G S +T+ S P ++ + YR A +V EAV+FP++ S K PV
Sbjct: 32 MVVPFQVSVSDL-GVSEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPV 90
Query: 416 TVDLCWTTAD 445
DL W ++
Sbjct: 91 HCDLIWVPSN 100
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 45.6 bits (103), Expect = 5e-04
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 242 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 421
+PFQ + D+ + + + ++S I YR A L L+A+V P+A S + P+T+
Sbjct: 1820 VPFQTVAMDVVAAGGNA-TFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITL 1878
Query: 422 DLCWTTADV 448
DL W+T +V
Sbjct: 1879 DLVWSTNNV 1887
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 43.2 bits (97), Expect = 0.003
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +2
Query: 245 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 424
PFQ F L + S ++ + + P +++ + +R A L L AVV PSA S+ P+TV
Sbjct: 46 PFQ-FEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ 104
Query: 425 LCWTTA 442
L W A
Sbjct: 105 LIWVPA 110
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 41.5 bits (93), Expect = 0.008
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 245 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 424
PFQ + G+E K+ S + ++ ++ YR A L ++E V P A + P++V
Sbjct: 2034 PFQWVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVS 2093
Query: 425 LCWTTADV 448
WT A +
Sbjct: 2094 AVWTIASI 2101
>UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosaic
virus|Rep: Coat protein - Turnip yellow mosaic virus
Length = 189
Score = 41.5 bits (93), Expect = 0.008
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 245 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 424
PFQ GT+ S+T+ ++ +VS++ YR A L +L + P+ + P TV
Sbjct: 34 PFQSEVL-FAGTKDAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPTFPTTVG 92
Query: 425 LCWTTAD 445
+CW A+
Sbjct: 93 VCWVPAN 99
>UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow
mosaic virus|Rep: Coat protein - Passion fruit yellow
mosaic virus
Length = 188
Score = 41.1 bits (92), Expect = 0.011
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +2
Query: 242 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 421
+PFQ L GT S+SV++ + VSS+ YR A L +L A + P+ S P TV
Sbjct: 37 LPFQTKLASL-GTAEVSDSVSIAANAAVSSLATPYRHARLTSLVATIHPNHLSPSNPTTV 95
Query: 422 DLCW 433
L W
Sbjct: 96 SLVW 99
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 39.9 bits (89), Expect = 0.025
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +2
Query: 275 GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 445
G + S+ +++ S P + + +R A L++ +A++ P + +P+TVDL W +A+
Sbjct: 44 GPKEVSSQISLSSCPELLRLTSLFRHARLLSAKAIITPFDGVVSLPITVDLAWVSAN 100
>UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Belladonna mottle virus (BMDV)
Length = 190
Score = 39.1 bits (87), Expect = 0.043
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 236 LIIPFQRLYFDLT--GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+++PFQ F+ T GT + V++Q+ ++ + YR A +V +A++ P+ ++
Sbjct: 32 IVLPFQ---FEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSN 88
Query: 410 PVTVDLCWTTAD 445
P+TV L W A+
Sbjct: 89 PLTVYLAWVPAN 100
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 36.3 bits (80), Expect = 0.30
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 242 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 421
+PFQ G K + + ++S + GYR A L++ E P A + P++V
Sbjct: 1908 VPFQWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISV 1967
Query: 422 DLCWTTADV 448
WT A +
Sbjct: 1968 TAVWTIASI 1976
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 35.5 bits (78), Expect = 0.53
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 299 VTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 445
V++ + +++ + GYR A LV L + P+ ++ PVTVD+ W A+
Sbjct: 52 VSLSASESLAKLTAGYRRAKLVELFLTITPTQLAIDNPVTVDVVWVPAN 100
>UniRef50_A0W712 Cluster: Glycosyl transferase, group 1; n=1;
Geobacter lovleyi SZ|Rep: Glycosyl transferase, group 1
- Geobacter lovleyi SZ
Length = 283
Score = 32.7 bits (71), Expect = 3.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 278 TETKSNSVTVQSLPNVSSI--IKGYRDAYLVNLEAVVF 385
TE V SLPN +SI ++GYRD YL + ++F
Sbjct: 63 TEFTGRGFNVISLPNYASIKLLEGYRDDYLTRTDRIIF 100
>UniRef50_A5AAN2 Cluster: Contig An04c0090, complete genome.
precursor; n=17; Pezizomycotina|Rep: Contig An04c0090,
complete genome. precursor - Aspergillus niger
Length = 232
Score = 32.3 bits (70), Expect = 4.9
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 236 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 415
L +P LYF + G +TK + LP + ++ Y A ++N ++ + P+LK+ V
Sbjct: 23 LSVPANALYFYMDGRQTKC---FFEELPKDTLVVGTYSTA-VINQQSNTYNVDPNLKMLV 78
Query: 416 TVD 424
TVD
Sbjct: 79 TVD 81
>UniRef50_UPI0000D9AAC6 Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 133
Score = 31.5 bits (68), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 231 NV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPP 332
N+ S CT++ P P P R+ SL +TSPP
Sbjct: 63 NIPRSRAQGCTAVSPPPGPARSASLYRAARTSPP 96
>UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and
related kinase; n=1; Marinobacter algicola DG893|Rep:
Chemotaxis protein histidine kinase and related kinase -
Marinobacter algicola DG893
Length = 2501
Score = 31.5 bits (68), Expect = 8.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 8 LFM-EEIVPLVVSAASAIPSLVDAFSSSKPPQTDT 109
+FM ++I L+ +A+P LVD F +PP DT
Sbjct: 852 IFMNDDIAALLEDVTAALPELVDDFEKRQPPSRDT 886
>UniRef50_A6C699 Cluster: Putative uncharacterized protein; n=2;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 285
Score = 31.5 bits (68), Expect = 8.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 128 PWNAQAGY-QSEGVWKKRKHRPRREWPKRQKRLKAQFLP 15
PW + Y +++ + ++ RPRR+ PK++KR QF P
Sbjct: 62 PWRMKMPYPKNQPLTRRLLQRPRRKRPKQRKRRPLQFSP 100
>UniRef50_A0QII3 Cluster: Oxidoreductase, short chain
dehydrogenase/reductase family protein; n=3;
Actinomycetales|Rep: Oxidoreductase, short chain
dehydrogenase/reductase family protein - Mycobacterium
avium (strain 104)
Length = 312
Score = 31.5 bits (68), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 110 GYQSEGVWKKRKHRPRREWPKRQKRLKAQFL 18
G+ + G+W+ +HRP R P +Q+R Q L
Sbjct: 199 GFLNTGIWESWRHRPPRYAPTQQRRTPEQTL 229
>UniRef50_Q92570 Cluster: Orphan nuclear receptor NR4A3; n=26;
Euteleostomi|Rep: Orphan nuclear receptor NR4A3 - Homo
sapiens (Human)
Length = 626
Score = 31.5 bits (68), Expect = 8.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,740,297
Number of Sequences: 1657284
Number of extensions: 5716564
Number of successful extensions: 19360
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19349
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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