Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d09
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0041 - 464695-464850,467485-469029                               29   2.3  
08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912...    27   6.9  
05_05_0329 - 24135654-24135848,24136273-24136404                       27   6.9  
01_05_0227 - 19512866-19514983                                         27   6.9  
02_05_0206 - 26773420-26773536,26773858-26773953,26774640-267747...    27   9.1  

>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 416 TVD 424
            +D
Sbjct: 100 PLD 102


>08_01_0927 -
           9123473-9123589,9124534-9124616,9125177-9125252,
           9125641-9125740,9125996-9126064,9126122-9126207,
           9126293-9126430,9126688-9126810,9128130-9129719,
           9129929-9130402
          Length = 951

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 41  SAASAIPSLVDAFSSSKPPQTDTPPARSM 127
           S+AS  P     +SSS PP++ TPP + +
Sbjct: 3   SSASEQPRGDQVWSSSSPPRSSTPPPQPL 31


>05_05_0329 - 24135654-24135848,24136273-24136404
          Length = 108

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 442 SSSPTKVNCDGYFEARGGRENDSLKIDKIRVAVA 341
           +  P  V   G  +A  GREND   ++  R AVA
Sbjct: 5   AQQPRGVKVGGIHDAPAGRENDLTTVELARFAVA 38


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 447 TSAVVQQRSTVTGILRLGAEGKTTASRL 364
           T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 21  TESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>02_05_0206 -
           26773420-26773536,26773858-26773953,26774640-26774749,
           26774835-26774935,26775340-26775638
          Length = 240

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 80  RKHRPRREWPKRQKRLKAQF 21
           RKHRP R WP+   +L   F
Sbjct: 216 RKHRPTRVWPELSSKLLDYF 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,096
Number of Sequences: 37544
Number of extensions: 174312
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)