Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d08
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    81   4e-18
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   6.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   6.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   6.4  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   6.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   8.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 81.0 bits (191), Expect = 4e-18
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = -3

Query: 294 PLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVS 136
           P   +RQTLMFSATFPE++Q LAG+FL NY+F+AVGIVG A TDVEQ F +VS
Sbjct: 340 PATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVS 392


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 151 DLFDVSTSASDDTNR 195
           +LF  + S+S DTNR
Sbjct: 403 ELFQATLSSSSDTNR 417


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 127 SNPTISLFNCDIMHNM 80
           S+P     NCD +HN+
Sbjct: 63  SDPKFLTENCDYIHNV 78


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 127 SNPTISLFNCDIMHNM 80
           S+P     NCD +HN+
Sbjct: 63  SDPKFLTENCDYIHNV 78


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 260 RQHSLKTSNIWLVVS*IIIYLW 195
           R+ + K SNI LVV+     LW
Sbjct: 99  RRVNYKDSNIGLVVANAFFLLW 120


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 298 ISTADEKANFNVFGNIP*RHPTFGWSFL 215
           ++T  EK  + +   I   +  FGWSFL
Sbjct: 256 LTTVVEKECYKMKVTIDAFNDIFGWSFL 283


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 298 ISTADEKANFNVFGNIP*RHPTFGWSFL 215
           ++T  EK  + +   I   +  FGWSFL
Sbjct: 182 LTTVVEKECYKMKVTIDAFNDIFGWSFL 209


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 TILIFLEIYNFFLYYYKTIYMFMWFY 381
           T+L   +  NF + +Y ++++ + +Y
Sbjct: 314 TVLKTNKYCNFIILFYLSVFVILVYY 339


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,108
Number of Sequences: 336
Number of extensions: 2003
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)