Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d08
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 57 1e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 1e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 5e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 8e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 37 0.001
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 35 0.006
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.095
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 0.51
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 27 1.2
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 2.7
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 4.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 4.7
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 6.2
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 6.2
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 24 8.2
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 24 8.2
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 8.2
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 24 8.2
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.2 bits (132), Expect = 1e-09
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = -3
Query: 282 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVSFS 130
+RQTLMFSATFP DIQ LA FL +Y+F++VG VG S ++ Q + V S
Sbjct: 364 ERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDS 414
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.8 bits (106), Expect = 1e-06
Identities = 24/52 (46%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = -3
Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEV 139
++ RQT+MFSAT+P+++Q LA +LN+Y+ V VG + AS +++QI +EV
Sbjct: 297 IRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQI-VEV 347
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 38.3 bits (85), Expect = 5e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -3
Query: 285 TKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
++RQT+MFSAT P + +LA +L + + +G +G A VEQ
Sbjct: 448 SRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQ 491
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.5 bits (83), Expect = 8e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -3
Query: 300 LYPLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV 139
L+ L T RQTL+FSAT P + A L + + V + + S D++ F V
Sbjct: 238 LHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSV 291
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = -3
Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV 139
++ RQT++FSATFP ++ LA + L + + VG +++VEQI +EV
Sbjct: 596 IRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEV 645
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 34.7 bits (76), Expect = 0.006
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 279 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQI 151
RQT+ FSAT+PE ++ LA FL + + + +G AS ++ QI
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQI 389
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.7 bits (66), Expect = 0.095
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 294 PLQTKRQTLMFSATFPEDIQ 235
P+ T+RQT +FSATF E +Q
Sbjct: 299 PMHTQRQTFIFSATFDEGLQ 318
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 0.51
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST--DVEQIFIEV 139
L RQT++FSAT + ++ LA L N F++V +ST ++ Q ++ V
Sbjct: 213 LPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTV 265
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 282 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAV 190
++Q +MFSAT +I+ + +F+ N L + V
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYV 259
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNN 208
L Q ++FSATF E ++ A RF N
Sbjct: 283 LPRNTQIVLFSATFSERVEKYAERFAPN 310
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 276 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV 139
Q ++ SAT P+D+ + +F N + + V ++Q FI V
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAV 241
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 414 FFFYTLLYP 388
FFFYTLLYP
Sbjct: 236 FFFYTLLYP 244
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 267 MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
+FSAT P ++ LA + + + VG+ A+ ++Q
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQ 263
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 80 VGFSNVRHIYIKRFLRILCNRW 15
VGF N + IY+K+ RIL ++
Sbjct: 101 VGFHNRKTIYLKQMARILSEKF 122
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 295 STADEKANFNVFGNIP*RHP 236
ST DE+ NF + GN P + P
Sbjct: 261 STPDEQKNFFIVGNAPQQTP 280
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 92 YAQYVGFSNVRHIYIKRFLRIL 27
Y +Y+ SNV+HI +L+ L
Sbjct: 143 YEEYINLSNVQHISYLEYLKNL 164
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 219 NDQPNVGCLQGMLPKTLKFAFSSAVDI 299
N PN C+Q +LP T + + +V I
Sbjct: 31 NPMPNRACVQKVLPVTKQISSDGSVQI 57
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 174 ASTDVEQIFIEVSFSNLTQPYHFSIVT 94
A +V F+ SF ++T P H++IVT
Sbjct: 101 AERNVHVPFLIPSFPSITFPNHYTIVT 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,329
Number of Sequences: 5004
Number of extensions: 31954
Number of successful extensions: 99
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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